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U2 snRNP auxilliary factor, large subunit, splicing factor [Arabidopsis thaliana]

NCBI Reference Sequence: NP_974695.1

Identical Proteins FASTA Graphics 

LOCUS       NP_974695                565 aa            linear   PLN 20-OCT-2022
DEFINITION  U2 snRNP auxilliary factor, large subunit, splicing factor
            [Arabidopsis thaliana].
ACCESSION   NP_974695
VERSION     NP_974695.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_202966.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 565)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 565)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 565)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 565)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE86688.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..565
                     /product="U2 snRNP auxilliary factor, large subunit,
                     splicing factor"
                     /calculated_mol_wt=63268
     Region          31..505
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..565
                     /gene="ATU2AF65A"
                     /locus_tag="AT4G36690"
                     /gene_synonym="AP22.29; AP22_29"
                     /coded_by="NM_202966.4:114..1811"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR361116.1,INSD:ES091161.1,INSD:ES195814.1,
                     INSD:BP785805.1,INSD:ES064858.1,INSD:EL204513.1,
                     INSD:ES131821.1,INSD:EH871514.1,INSD:DR184888.1,
                     INSD:BP650129.1,INSD:BE529461.1,INSD:EL978907.1,
                     INSD:ES127005.1,INSD:EG457337.1,INSD:ES060127.1,
                     INSD:BE526961.1,INSD:AV794431.1,INSD:CB255280.1,
                     INSD:DR361106.1,INSD:BP796140.1,INSD:EG457585.1,
                     INSD:DR361113.1,INSD:EG438685.1,INSD:N96534.1,
                     INSD:BP581781.1,INSD:BP618609.1,INSD:BE523781.1,
                     INSD:BP620964.1,INSD:EG457597.1,INSD:EG461773.1,
                     INSD:BP819302.1,INSD:ES069892.1,INSD:ES135090.1,
                     INSD:ES105953.1,INSD:BP603233.1,INSD:EL030289.1,
                     INSD:BP601293.1,INSD:DR361107.1,INSD:N96578.1,
                     INSD:BP600760.1,INSD:EH804247.1,INSD:EL978366.1,
                     INSD:BP864461.1,INSD:ES100189.1,INSD:AV530328.1,
                     INSD:BE523180.1,INSD:BP831051.1,INSD:BP616793.1,
                     INSD:EH969881.1,INSD:DR361114.1,INSD:BP601547.1,
                     INSD:DR361108.1,INSD:BE526152.1,INSD:BP868700.1,
                     INSD:BE523640.1,INSD:BE525657.1,INSD:EH950727.1,
                     INSD:BP561342.2,INSD:EH942012.1,INSD:T45178.1,
                     INSD:CB259183.1,INSD:EL311768.1,INSD:EG438683.1,
                     INSD:ES062911.1,INSD:BP854791.1,INSD:DR361110.1,
                     INSD:BP789297.1,INSD:BP608230.1,INSD:EG457336.1,
                     INSD:DR361115.1,INSD:ES017804.1,INSD:DR184884.1,
                     INSD:ES036244.1,INSD:EL245374.1,INSD:DR361109.1,
                     INSD:ES024150.1,INSD:EG479917.1,INSD:ES142110.1,
                     INSD:BP806886.1,INSD:BP569791.1,INSD:BP616265.1,
                     INSD:EG479926.1,INSD:ES048576.1,INSD:BP832301.1,
                     INSD:EH846834.1,INSD:DR184889.1,INSD:ES114978.1,
                     INSD:BP790959.1,INSD:AA720298.1,INSD:ES106616.1,
                     INSD:DR184883.1,INSD:ES194376.1,INSD:AV829600.1,
                     INSD:DR361112.1,INSD:BE528084.1,INSD:DR361111.1,
                     INSD:ES001062.1,INSD:DR184885.1,INSD:BE529831.1,
                     INSD:EL010139.1,INSD:BP612616.1,INSD:BE526242.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:BX827587.1"
                     /note="ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide
                     binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
                     splicing, via spliceosome, defense response to bacterium;
                     LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures;
                     EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
                     DOMAIN/s: RNA recognition motif, RNP-1
                     (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
                     (InterPro:IPR012677), U2 snRNP auxilliary factor, large
                     subunit, splicing factor (InterPro:IPR006529); BEST
                     Arabidopsis thaliana protein match is: U2 snRNP auxilliary
                     factor, large subunit, splicing factor (TAIR:AT1G60900.1);
                     Has 35333 Blast hits to 34131 proteins in 2444 species:
                     Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
                     991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
                     (source: NCBI BLink)."
                     /db_xref="GeneID:829822"
                     /db_xref="TAIR:AT4G36690"
                     /db_xref="Araport:AT4G36690"
ORIGIN      
        1 msefedhegn gtvadaiyde enggrdgeie dqldskpkre srdheretsr skdrerekgr
       61 dkdrerdsev srrsrdrdge kskersrdkd rdhrerhhrs srhrdhsrer gerrerggrd
      121 dddyrrsrdr dhdrrrddrg grrsrrsrsr skdrserrtr srspskskqr vsgfdmappa
      181 samlaagaav tgqvppappt lpgagmfpnm fplptgqsfg glsmmpiqam tqqatrharr
      241 vyvgglspta neqsvatffs qvmaavggnt agpgdavvnv yinhekkfaf vemrsveeas
      301 namsldgiif egapvkvrrp sdynpslaat lgpsqpsphl nlaavgltpg asgglegpdr
      361 ifvgglpyyf tesqvrelle sfgglkgfdl vkdretgnsk gyafcvyqdl svtdiacaal
      421 ngikmgdktl tvrranqgtm lqkpeqenvl lhaqqqiafq rvmlqpgava ttvvcltqvv
      481 tedelrddee ygdimedmrq eggkfafcyk esaltytdrr lhkppnlfit nghyflkekt
      541 dlflsvfscl vfemfcsltl kmqvl
//
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Protein clusters for NP_974695.1

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