LOCUS NP_974695 565 aa linear PLN 20-OCT-2022
DEFINITION U2 snRNP auxilliary factor, large subunit, splicing factor
[Arabidopsis thaliana].
ACCESSION NP_974695
VERSION NP_974695.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_202966.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 565)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 565)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 565)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 565)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE86688.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..565
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..565
/product="U2 snRNP auxilliary factor, large subunit,
splicing factor"
/calculated_mol_wt=63268
Region 31..505
/region_name="U2AF_lg"
/note="U2 snRNP auxilliary factor, large subunit, splicing
factor; TIGR01642"
/db_xref="CDD:273727"
CDS 1..565
/gene="ATU2AF65A"
/locus_tag="AT4G36690"
/gene_synonym="AP22.29; AP22_29"
/coded_by="NM_202966.4:114..1811"
/inference="Similar to RNA sequence,
EST:INSD:DR361116.1,INSD:ES091161.1,INSD:ES195814.1,
INSD:BP785805.1,INSD:ES064858.1,INSD:EL204513.1,
INSD:ES131821.1,INSD:EH871514.1,INSD:DR184888.1,
INSD:BP650129.1,INSD:BE529461.1,INSD:EL978907.1,
INSD:ES127005.1,INSD:EG457337.1,INSD:ES060127.1,
INSD:BE526961.1,INSD:AV794431.1,INSD:CB255280.1,
INSD:DR361106.1,INSD:BP796140.1,INSD:EG457585.1,
INSD:DR361113.1,INSD:EG438685.1,INSD:N96534.1,
INSD:BP581781.1,INSD:BP618609.1,INSD:BE523781.1,
INSD:BP620964.1,INSD:EG457597.1,INSD:EG461773.1,
INSD:BP819302.1,INSD:ES069892.1,INSD:ES135090.1,
INSD:ES105953.1,INSD:BP603233.1,INSD:EL030289.1,
INSD:BP601293.1,INSD:DR361107.1,INSD:N96578.1,
INSD:BP600760.1,INSD:EH804247.1,INSD:EL978366.1,
INSD:BP864461.1,INSD:ES100189.1,INSD:AV530328.1,
INSD:BE523180.1,INSD:BP831051.1,INSD:BP616793.1,
INSD:EH969881.1,INSD:DR361114.1,INSD:BP601547.1,
INSD:DR361108.1,INSD:BE526152.1,INSD:BP868700.1,
INSD:BE523640.1,INSD:BE525657.1,INSD:EH950727.1,
INSD:BP561342.2,INSD:EH942012.1,INSD:T45178.1,
INSD:CB259183.1,INSD:EL311768.1,INSD:EG438683.1,
INSD:ES062911.1,INSD:BP854791.1,INSD:DR361110.1,
INSD:BP789297.1,INSD:BP608230.1,INSD:EG457336.1,
INSD:DR361115.1,INSD:ES017804.1,INSD:DR184884.1,
INSD:ES036244.1,INSD:EL245374.1,INSD:DR361109.1,
INSD:ES024150.1,INSD:EG479917.1,INSD:ES142110.1,
INSD:BP806886.1,INSD:BP569791.1,INSD:BP616265.1,
INSD:EG479926.1,INSD:ES048576.1,INSD:BP832301.1,
INSD:EH846834.1,INSD:DR184889.1,INSD:ES114978.1,
INSD:BP790959.1,INSD:AA720298.1,INSD:ES106616.1,
INSD:DR184883.1,INSD:ES194376.1,INSD:AV829600.1,
INSD:DR361112.1,INSD:BE528084.1,INSD:DR361111.1,
INSD:ES001062.1,INSD:DR184885.1,INSD:BE529831.1,
INSD:EL010139.1,INSD:BP612616.1,INSD:BE526242.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX827587.1"
/note="ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide
binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
splicing, via spliceosome, defense response to bacterium;
LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), U2 snRNP auxilliary factor, large
subunit, splicing factor (InterPro:IPR006529); BEST
Arabidopsis thaliana protein match is: U2 snRNP auxilliary
factor, large subunit, splicing factor (TAIR:AT1G60900.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="GeneID:829822"
/db_xref="TAIR:AT4G36690"
/db_xref="Araport:AT4G36690"
ORIGIN
1 msefedhegn gtvadaiyde enggrdgeie dqldskpkre srdheretsr skdrerekgr
61 dkdrerdsev srrsrdrdge kskersrdkd rdhrerhhrs srhrdhsrer gerrerggrd
121 dddyrrsrdr dhdrrrddrg grrsrrsrsr skdrserrtr srspskskqr vsgfdmappa
181 samlaagaav tgqvppappt lpgagmfpnm fplptgqsfg glsmmpiqam tqqatrharr
241 vyvgglspta neqsvatffs qvmaavggnt agpgdavvnv yinhekkfaf vemrsveeas
301 namsldgiif egapvkvrrp sdynpslaat lgpsqpsphl nlaavgltpg asgglegpdr
361 ifvgglpyyf tesqvrelle sfgglkgfdl vkdretgnsk gyafcvyqdl svtdiacaal
421 ngikmgdktl tvrranqgtm lqkpeqenvl lhaqqqiafq rvmlqpgava ttvvcltqvv
481 tedelrddee ygdimedmrq eggkfafcyk esaltytdrr lhkppnlfit nghyflkekt
541 dlflsvfscl vfemfcsltl kmqvl
//