LOCUS NP_568570 334 aa linear PLN 20-OCT-2022
DEFINITION homeobox protein 23 [Arabidopsis thaliana].
ACCESSION NP_568570
VERSION NP_568570.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_123338.3
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 334)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 334)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 334)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 334)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED94472.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..334
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..334
/product="homeobox protein 23"
/calculated_mol_wt=36255
Region 56..109
/region_name="ZF-HD_dimer"
/note="ZF-HD protein dimerization region; pfam04770"
/db_xref="CDD:398439"
Region 200..256
/region_name="homeo_ZF_HD"
/note="homeobox domain, ZF-HD class; TIGR01565"
/db_xref="CDD:130628"
CDS 1..334
/gene="HB23"
/locus_tag="AT5G39760"
/gene_synonym="AtHB23; homeobox protein 23; MKM21.8;
MKM21_8; ZHD10; ZINC FINGER HOMEODOMAIN 10"
/coded_by="NM_123338.3:194..1198"
/inference="Similar to RNA sequence,
EST:INSD:AV533786.1,INSD:AU227526.1,INSD:AV807286.1,
INSD:EG505663.1,INSD:DR352487.1,INSD:EH955391.1,
INSD:AV805848.1,INSD:ES006003.1,INSD:AV816919.1,
INSD:AV829379.1,INSD:EH844892.1,INSD:BP611360.1,
INSD:AV536034.1,INSD:EL308923.1,INSD:AV829098.1,
INSD:EL171369.1,INSD:AV541950.1,INSD:EL971610.1,
INSD:AU236574.1,INSD:EL059340.1,INSD:DR352486.1,
INSD:DR381615.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY086395.1,INSD:BX829417.1,INSD:AK227191.1,
INSD:AY091034.1,INSD:AY117347.1,INSD:BX830540.1"
/note="homeobox protein 23 (HB23); FUNCTIONS IN: DNA
binding, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: regulation of transcription;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: Homeobox
domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox
protein, Cys/His-rich dimerisation domain
(InterPro:IPR006456), Homeodomain-related
(InterPro:IPR012287); BEST Arabidopsis thaliana protein
match is: homeobox protein 34 (TAIR:AT3G28920.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:833972"
/db_xref="TAIR:AT5G39760"
/db_xref="Araport:AT5G39760"
ORIGIN
1 mmdmtptitt tttptpkspe pesetptriq pakpisfsng iikrhhhhhh pllftykecl
61 knhaaalggh aldgcgefmp spssissdpt slkcaacgch rnfhrrdpdn nndssqippp
121 pstaveyqph hrhhpppppp pppprspnsa spppisssym llslsgtnnn nnnlasfsdl
181 nfsagnnhhh hhqhtlhgsr krfrtkfsqf qkekmhefae rvgwkmqkrd eddvrdfcrq
241 igvdksvlkv wmhnnkntfn rrdiagneir qidngggnht pilageinnh nnghhgvggg
301 gelhqsvssg gggggfdsds gganggnvng ssss
//