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homeobox protein 23 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_568570.1

Identical Proteins FASTA Graphics 

LOCUS       NP_568570                334 aa            linear   PLN 20-OCT-2022
DEFINITION  homeobox protein 23 [Arabidopsis thaliana].
ACCESSION   NP_568570
VERSION     NP_568570.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_123338.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 334)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 334)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 334)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 334)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED94472.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..334
                     /product="homeobox protein 23"
                     /calculated_mol_wt=36255
     Region          56..109
                     /region_name="ZF-HD_dimer"
                     /note="ZF-HD protein dimerization region; pfam04770"
                     /db_xref="CDD:398439"
     Region          200..256
                     /region_name="homeo_ZF_HD"
                     /note="homeobox domain, ZF-HD class; TIGR01565"
                     /db_xref="CDD:130628"
     CDS             1..334
                     /gene="HB23"
                     /locus_tag="AT5G39760"
                     /gene_synonym="AtHB23; homeobox protein 23; MKM21.8;
                     MKM21_8; ZHD10; ZINC FINGER HOMEODOMAIN 10"
                     /coded_by="NM_123338.3:194..1198"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV533786.1,INSD:AU227526.1,INSD:AV807286.1,
                     INSD:EG505663.1,INSD:DR352487.1,INSD:EH955391.1,
                     INSD:AV805848.1,INSD:ES006003.1,INSD:AV816919.1,
                     INSD:AV829379.1,INSD:EH844892.1,INSD:BP611360.1,
                     INSD:AV536034.1,INSD:EL308923.1,INSD:AV829098.1,
                     INSD:EL171369.1,INSD:AV541950.1,INSD:EL971610.1,
                     INSD:AU236574.1,INSD:EL059340.1,INSD:DR352486.1,
                     INSD:DR381615.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY086395.1,INSD:BX829417.1,INSD:AK227191.1,
                     INSD:AY091034.1,INSD:AY117347.1,INSD:BX830540.1"
                     /note="homeobox protein 23 (HB23); FUNCTIONS IN: DNA
                     binding, sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: regulation of transcription;
                     EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
                     growth stages; CONTAINS InterPro DOMAIN/s: Homeobox
                     domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox
                     protein, Cys/His-rich dimerisation domain
                     (InterPro:IPR006456), Homeodomain-related
                     (InterPro:IPR012287); BEST Arabidopsis thaliana protein
                     match is: homeobox protein 34 (TAIR:AT3G28920.1); Has
                     30201 Blast hits to 17322 proteins in 780 species: Archae
                     - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
                     Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
                     (source: NCBI BLink)."
                     /db_xref="GeneID:833972"
                     /db_xref="TAIR:AT5G39760"
                     /db_xref="Araport:AT5G39760"
ORIGIN      
        1 mmdmtptitt tttptpkspe pesetptriq pakpisfsng iikrhhhhhh pllftykecl
       61 knhaaalggh aldgcgefmp spssissdpt slkcaacgch rnfhrrdpdn nndssqippp
      121 pstaveyqph hrhhpppppp pppprspnsa spppisssym llslsgtnnn nnnlasfsdl
      181 nfsagnnhhh hhqhtlhgsr krfrtkfsqf qkekmhefae rvgwkmqkrd eddvrdfcrq
      241 igvdksvlkv wmhnnkntfn rrdiagneir qidngggnht pilageinnh nnghhgvggg
      301 gelhqsvssg gggggfdsds gganggnvng ssss
//
1..334
/gene="HB23"
/locus_tag="AT5G39760"
/gene_synonym="AtHB23; homeobox protein 23; MKM21.8;
MKM21_8; ZHD10; ZINC FINGER HOMEODOMAIN 10"
/coded_by="NM_123338.3:194..1198"
/inference="Similar to RNA sequence,
EST:INSD:AV533786.1,INSD:AU227526.1,INSD:AV807286.1,
INSD:EG505663.1,INSD:DR352487.1,INSD:EH955391.1,
INSD:AV805848.1,INSD:ES006003.1,INSD:AV816919.1,
INSD:AV829379.1,INSD:EH844892.1,INSD:BP611360.1,
INSD:AV536034.1,INSD:EL308923.1,INSD:AV829098.1,
INSD:EL171369.1,INSD:AV541950.1,INSD:EL971610.1,
INSD:AU236574.1,INSD:EL059340.1,INSD:DR352486.1,
INSD:DR381615.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY086395.1,INSD:BX829417.1,INSD:AK227191.1,
INSD:AY091034.1,INSD:AY117347.1,INSD:BX830540.1"
/note="homeobox protein 23 (HB23); FUNCTIONS IN: DNA
binding, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: regulation of transcription;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: Homeobox
domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox
protein, Cys/His-rich dimerisation domain
(InterPro:IPR006456), Homeodomain-related
(InterPro:IPR012287); BEST Arabidopsis thaliana protein
match is: homeobox protein 34 (TAIR:AT3G28920.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:833972"
/db_xref="TAIR:AT5G39760"
/db_xref="Araport:AT5G39760"
Feature NP_568570 : 1 segment
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Protein clusters for NP_568570.1

More about the HB23 gene

  • HB23 gene
    Also Known As: AT5G39760, AtHB23, MKM2...

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