LOCUS NP_181602 610 aa linear PLN 20-OCT-2022
DEFINITION P-loop containing nucleoside triphosphate hydrolases superfamily
protein [Arabidopsis thaliana].
ACCESSION NP_181602
VERSION NP_181602.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_129632.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 610)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 610)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 610)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 610)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC09865.
On Sep 12, 2016 this sequence version replaced NP_181602.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..610
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..610
/product="P-loop containing nucleoside triphosphate
hydrolases superfamily protein"
/calculated_mol_wt=68214
Region 31..497
/region_name="SrmB"
/note="Superfamily II DNA and RNA helicase [Replication,
recombination and repair]; COG0513"
/db_xref="CDD:440279"
Region 41..257
/region_name="DEADc_DDX31"
/note="DEAD-box helicase domain of DEAD box protein 31;
cd17949"
/db_xref="CDD:350707"
Site order(50..51,53..55,58,76..83)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350707"
Region 509..569
/region_name="DUF4217"
/note="Domain of unknown function (DUF4217); pfam13959"
/db_xref="CDD:464056"
CDS 1..610
/locus_tag="AT2G40700"
/gene_synonym="T7D17.12; T7D17_12"
/coded_by="NM_129632.2:145..1977"
/inference="Similar to RNA sequence,
EST:INSD:Z26050.1,INSD:EL205593.1,INSD:ES056869.1,
INSD:Z26382.1,INSD:CK117650.1,INSD:EL300457.1,
INSD:EL989100.1,INSD:EH866399.1"
/inference="similar to RNA sequence, mRNA:INSD:AJ010468.1"
/note="P-loop containing nucleoside triphosphate
hydrolases superfamily protein; FUNCTIONS IN: helicase
activity, ATP binding, ATP-dependent helicase activity,
nucleic acid binding; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA helicase, DEAD-box type, Q motif
(InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), DEAD-like helicase,
N-terminal (InterPro:IPR014001), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021); BEST
Arabidopsis thaliana protein match is: DEA(D/H)-box RNA
helicase family protein (TAIR:AT5G65900.1); Has 40440
Blast hits to 37904 proteins in 2977 species: Archae -
739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486;
Plants - 2481; Viruses - 5; Other Eukaryotes - 6804
(source: NCBI BLink)."
/db_xref="Araport:AT2G40700"
/db_xref="GeneID:818665"
/db_xref="TAIR:AT2G40700"
ORIGIN
1 mmkraqqsar etkqeakdas kaksglfasc sfsslgldtk lsdqlkermg feaptlvqaq
61 aipvilsgrd vlvnaptgtg ktiaylapli hhlqghspkv drshgtfalv ivptrelclq
121 vyetlekllh rfhwivpgyv mggekkakek arlrkgisil iatpgrlldh lkntasfvhk
181 nlrwvifdea dsilelgygk eieqiikllg sgqneqgeed divpkgiqkq nlllsatlnd
241 kvndlaklsl ddpvmigldn tklqqnlsie spaapdsdae dmvihvnksa nplsedygip
301 sqlvqrylrv pcgarlvall svlknlfere asqkvvvffs trdavdfhys llsefqwppn
361 seteeegtke lflkcktfrl hgsmeqedrr safgtfktek qavllstdva argldfpkvr
421 ciiqydcpge ateyvhrvgr tarigekgea llflqpieid ylkelkkhga slteyplmkv
481 ldkfpipgnm prikkvlsle shpwvislqr alesltyaep kmkslaknaf vswvrgyaah
541 kgelksifvv kklhlghvak sfalreqpsl vgkshhketm krkrderqkg qqgkkrkkms
601 gtgnrstqkt
//