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P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_181602.2

Identical Proteins FASTA Graphics 

LOCUS       NP_181602                610 aa            linear   PLN 20-OCT-2022
DEFINITION  P-loop containing nucleoside triphosphate hydrolases superfamily
            protein [Arabidopsis thaliana].
ACCESSION   NP_181602
VERSION     NP_181602.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_129632.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 610)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 610)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 610)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 610)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC09865.
            
            On Sep 12, 2016 this sequence version replaced NP_181602.1.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..610
                     /product="P-loop containing nucleoside triphosphate
                     hydrolases superfamily protein"
                     /calculated_mol_wt=68214
     Region          31..497
                     /region_name="SrmB"
                     /note="Superfamily II DNA and RNA helicase [Replication,
                     recombination and repair]; COG0513"
                     /db_xref="CDD:440279"
     Region          41..257
                     /region_name="DEADc_DDX31"
                     /note="DEAD-box helicase domain of DEAD box protein 31;
                     cd17949"
                     /db_xref="CDD:350707"
     Site            order(50..51,53..55,58,76..83)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350707"
     Region          509..569
                     /region_name="DUF4217"
                     /note="Domain of unknown function (DUF4217); pfam13959"
                     /db_xref="CDD:464056"
     CDS             1..610
                     /locus_tag="AT2G40700"
                     /gene_synonym="T7D17.12; T7D17_12"
                     /coded_by="NM_129632.2:145..1977"
                     /inference="Similar to RNA sequence,
                     EST:INSD:Z26050.1,INSD:EL205593.1,INSD:ES056869.1,
                     INSD:Z26382.1,INSD:CK117650.1,INSD:EL300457.1,
                     INSD:EL989100.1,INSD:EH866399.1"
                     /inference="similar to RNA sequence, mRNA:INSD:AJ010468.1"
                     /note="P-loop containing nucleoside triphosphate
                     hydrolases superfamily protein; FUNCTIONS IN: helicase
                     activity, ATP binding, ATP-dependent helicase activity,
                     nucleic acid binding; EXPRESSED IN: 23 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: RNA helicase, DEAD-box type, Q motif
                     (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box
                     type, N-terminal (InterPro:IPR011545), DEAD-like helicase,
                     N-terminal (InterPro:IPR014001), DNA/RNA helicase,
                     C-terminal (InterPro:IPR001650), Helicase, superfamily
                     1/2, ATP-binding domain (InterPro:IPR014021); BEST
                     Arabidopsis thaliana protein match is: DEA(D/H)-box RNA
                     helicase family protein (TAIR:AT5G65900.1); Has 40440
                     Blast hits to 37904 proteins in 2977 species: Archae -
                     739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486;
                     Plants - 2481; Viruses - 5; Other Eukaryotes - 6804
                     (source: NCBI BLink)."
                     /db_xref="Araport:AT2G40700"
                     /db_xref="GeneID:818665"
                     /db_xref="TAIR:AT2G40700"
ORIGIN      
        1 mmkraqqsar etkqeakdas kaksglfasc sfsslgldtk lsdqlkermg feaptlvqaq
       61 aipvilsgrd vlvnaptgtg ktiaylapli hhlqghspkv drshgtfalv ivptrelclq
      121 vyetlekllh rfhwivpgyv mggekkakek arlrkgisil iatpgrlldh lkntasfvhk
      181 nlrwvifdea dsilelgygk eieqiikllg sgqneqgeed divpkgiqkq nlllsatlnd
      241 kvndlaklsl ddpvmigldn tklqqnlsie spaapdsdae dmvihvnksa nplsedygip
      301 sqlvqrylrv pcgarlvall svlknlfere asqkvvvffs trdavdfhys llsefqwppn
      361 seteeegtke lflkcktfrl hgsmeqedrr safgtfktek qavllstdva argldfpkvr
      421 ciiqydcpge ateyvhrvgr tarigekgea llflqpieid ylkelkkhga slteyplmkv
      481 ldkfpipgnm prikkvlsle shpwvislqr alesltyaep kmkslaknaf vswvrgyaah
      541 kgelksifvv kklhlghvak sfalreqpsl vgkshhketm krkrderqkg qqgkkrkkms
      601 gtgnrstqkt
//
1..610
/locus_tag="AT2G40700"
/gene_synonym="T7D17.12; T7D17_12"
/coded_by="NM_129632.2:145..1977"
/inference="Similar to RNA sequence,
EST:INSD:Z26050.1,INSD:EL205593.1,INSD:ES056869.1,
INSD:Z26382.1,INSD:CK117650.1,INSD:EL300457.1,
INSD:EL989100.1,INSD:EH866399.1"
/inference="similar to RNA sequence, mRNA:INSD:AJ010468.1"
/note="P-loop containing nucleoside triphosphate
hydrolases superfamily protein; FUNCTIONS IN: helicase
activity, ATP binding, ATP-dependent helicase activity,
nucleic acid binding; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA helicase, DEAD-box type, Q motif
(InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), DEAD-like helicase,
N-terminal (InterPro:IPR014001), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021); BEST
Arabidopsis thaliana protein match is: DEA(D/H)-box RNA
helicase family protein (TAIR:AT5G65900.1); Has 40440
Blast hits to 37904 proteins in 2977 species: Archae -
739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486;
Plants - 2481; Viruses - 5; Other Eukaryotes - 6804
(source: NCBI BLink)."
/db_xref="Araport:AT2G40700"
/db_xref="GeneID:818665"
/db_xref="TAIR:AT2G40700"
Feature NP_181602 : 1 segment
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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT2G40700 gene (NM_129632.2).

More about the AT2G40700 gene

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