LOCUS NM_148707 1272 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family
protein (AT3G10845), partial mRNA.
ACCESSION NM_148707
VERSION NM_148707.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1272)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1272)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1272)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1272)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..1272
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene <1..>1272
/locus_tag="AT3G10845"
/db_xref="Araport:AT3G10845"
/db_xref="GeneID:820254"
/db_xref="TAIR:AT3G10845"
CDS 1..1272
/locus_tag="AT3G10845"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G45100.1); Has 2317 Blast
hits to 1788 proteins in 256 species: Archae - 0; Bacteria
- 24; Metazoa - 947; Fungi - 528; Plants - 665; Viruses -
0; Other Eukaryotes - 153 (source: NCBI BLink)."
/codon_start=1
/product="RNA-binding (RRM/RBD/RNP motifs) family protein"
/protein_id="NP_683549.1"
/db_xref="GeneID:820254"
/db_xref="TAIR:AT3G10845"
/db_xref="Araport:AT3G10845"
/translation="MASSSKEVNLCGKRNPEDDDLETKPFLKKHKDEEKKEETPEGLA
DSLQHKSDQANLISLKEEESTVEGRDDTPDFVEALEKKDGECLLDRKIYLKVPKLSSS
LTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIA
NHEDKPVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNH
TGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQER
DEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIVDQSGK
HMGCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAEIAPYPLQHMYKLAEKLWYED
NLLRESNLKQQKAKSNGFCGKKITFSYGDDC"
ORIGIN
1 atggccagtt ctagcaagga agttaattta tgtggtaaga gaaatccgga agatgatgat
61 ttggagacca aaccgtttct caagaaacat aaggacgagg agaagaaaga ggagacaccg
121 gaaggacttg ctgatagcct ccagcacaag tctgatcaag ctaatttaat ctctctcaag
181 gaggaggaaa gtactgtgga aggacgtgat gacactcccg attttgttga ggcactggaa
241 aagaaggatg gagaatgttt gctcgatcgc aagatttatc ttaaagtgcc taagctaagc
301 tcttcattga ctcttcctac gtaccaagac ttccttccac gacaagaaga tgagacacct
361 cccgccgatt ttgctgagga agttctcttt gttgccaatc tctcccccca aactaagata
421 ttagatatct tcggtttctg tcaagatgtt ggagaagttg ttagtgttcg acttattgca
481 aaccatgagg acaagcctgt gggctgtgcc tttgttgagt ttctttctgc caacgaagca
541 aagaaggtgc tggaaaacaa gaatggtgaa tattttcatg gtcataagat cattttgatg
601 agaggacatg gtgaaactcc cgatttcgct gagcatcgac taattgttaa ccacactggc
661 aagcatgtgg gcaagggatt tgttgagttt gcttctgcta aggaagcaga gaatgcgctg
721 gaaaagaaga agggtgaata tttgcaggat ggcgagattt ttcttaaggc ggctaacata
781 gctccattcc ctccacccaa gtacgaagac taccttggac aagaaagaga tgaggcagca
841 gtggaaggac ttgctgaaac tccctatttt gttgaggaag caagaaaaaa gacgcttttt
901 gttaccaatc tccctcctag aactagtata caaaggatgt tgtatttctt ccaagacttt
961 gaagttgttc gtgttcgact tattgttgac caatcgggta agcatatggg ctgtggctat
1021 tttgagtttg cttctgctaa tgaagcagag aaggcgctgg aacagaggaa tggtaaaagt
1081 ttgcgctatc acaaaatctt tcttgagctg gctgagatag ctccataccc tctccaacac
1141 atgtacaagc ttgcagagaa gctttggtac gaagacaacc ttctacgaga atcgaatctg
1201 aagcaacaga aggcaaaatc caacggattc tgcggtaaga agattacctt ctcttacggg
1261 gacgactgct ag
//