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Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein (AT3G10845), partial mRNA

NCBI Reference Sequence: NM_148707.1

FASTA Graphics 

LOCUS       NM_148707               1272 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family
            protein (AT3G10845), partial mRNA.
ACCESSION   NM_148707
VERSION     NM_148707.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 1272)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1272)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1272)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            <1..>1272
                     /locus_tag="AT3G10845"
                     /db_xref="Araport:AT3G10845"
                     /db_xref="GeneID:820254"
                     /db_xref="TAIR:AT3G10845"
     CDS             1..1272
                     /locus_tag="AT3G10845"
                     /note="RNA-binding (RRM/RBD/RNP motifs) family protein;
                     FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
                     acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition
                     motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
                     alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
                     thaliana protein match is: RNA-binding (RRM/RBD/RNP
                     motifs) family protein (TAIR:AT1G45100.1); Has 2317 Blast
                     hits to 1788 proteins in 256 species: Archae - 0; Bacteria
                     - 24; Metazoa - 947; Fungi - 528; Plants - 665; Viruses -
                     0; Other Eukaryotes - 153 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RNA-binding (RRM/RBD/RNP motifs) family protein"
                     /protein_id="NP_683549.1"
                     /db_xref="GeneID:820254"
                     /db_xref="TAIR:AT3G10845"
                     /db_xref="Araport:AT3G10845"
                     /translation="MASSSKEVNLCGKRNPEDDDLETKPFLKKHKDEEKKEETPEGLA
                     DSLQHKSDQANLISLKEEESTVEGRDDTPDFVEALEKKDGECLLDRKIYLKVPKLSSS
                     LTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIA
                     NHEDKPVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNH
                     TGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQER
                     DEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIVDQSGK
                     HMGCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAEIAPYPLQHMYKLAEKLWYED
                     NLLRESNLKQQKAKSNGFCGKKITFSYGDDC"
ORIGIN      
        1 atggccagtt ctagcaagga agttaattta tgtggtaaga gaaatccgga agatgatgat
       61 ttggagacca aaccgtttct caagaaacat aaggacgagg agaagaaaga ggagacaccg
      121 gaaggacttg ctgatagcct ccagcacaag tctgatcaag ctaatttaat ctctctcaag
      181 gaggaggaaa gtactgtgga aggacgtgat gacactcccg attttgttga ggcactggaa
      241 aagaaggatg gagaatgttt gctcgatcgc aagatttatc ttaaagtgcc taagctaagc
      301 tcttcattga ctcttcctac gtaccaagac ttccttccac gacaagaaga tgagacacct
      361 cccgccgatt ttgctgagga agttctcttt gttgccaatc tctcccccca aactaagata
      421 ttagatatct tcggtttctg tcaagatgtt ggagaagttg ttagtgttcg acttattgca
      481 aaccatgagg acaagcctgt gggctgtgcc tttgttgagt ttctttctgc caacgaagca
      541 aagaaggtgc tggaaaacaa gaatggtgaa tattttcatg gtcataagat cattttgatg
      601 agaggacatg gtgaaactcc cgatttcgct gagcatcgac taattgttaa ccacactggc
      661 aagcatgtgg gcaagggatt tgttgagttt gcttctgcta aggaagcaga gaatgcgctg
      721 gaaaagaaga agggtgaata tttgcaggat ggcgagattt ttcttaaggc ggctaacata
      781 gctccattcc ctccacccaa gtacgaagac taccttggac aagaaagaga tgaggcagca
      841 gtggaaggac ttgctgaaac tccctatttt gttgaggaag caagaaaaaa gacgcttttt
      901 gttaccaatc tccctcctag aactagtata caaaggatgt tgtatttctt ccaagacttt
      961 gaagttgttc gtgttcgact tattgttgac caatcgggta agcatatggg ctgtggctat
     1021 tttgagtttg cttctgctaa tgaagcagag aaggcgctgg aacagaggaa tggtaaaagt
     1081 ttgcgctatc acaaaatctt tcttgagctg gctgagatag ctccataccc tctccaacac
     1141 atgtacaagc ttgcagagaa gctttggtac gaagacaacc ttctacgaga atcgaatctg
     1201 aagcaacaga aggcaaaatc caacggattc tgcggtaaga agattacctt ctcttacggg
     1261 gacgactgct ag
//
1..1272
/locus_tag="AT3G10845"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G45100.1); Has 2317 Blast
hits to 1788 proteins in 256 species: Archae - 0; Bacteria
- 24; Metazoa - 947; Fungi - 528; Plants - 665; Viruses -
0; Other Eukaryotes - 153 (source: NCBI BLink)."
/codon_start=1
/product="RNA-binding (RRM/RBD/RNP motifs) family protein"
/protein_id="NP_683549.1"
/db_xref="GeneID:820254"
/db_xref="TAIR:AT3G10845"
/db_xref="Araport:AT3G10845"
/translation="MASSSKEVNLCGKRNPEDDDLETKPFLKKHKDEEKKEETPEGLA
DSLQHKSDQANLISLKEEESTVEGRDDTPDFVEALEKKDGECLLDRKIYLKVPKLSSS
LTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIA
NHEDKPVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNH
TGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQER
DEAAVEGLAETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQDFEVVRVRLIVDQSGK
HMGCGYFEFASANEAEKALEQRNGKSLRYHKIFLELAEIAPYPLQHMYKLAEKLWYED
NLLRESNLKQQKAKSNGFCGKKITFSYGDDC"
Feature NM_148707 : 1 segment
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for RNA-binding (RRM/RBD/RNP motifs) family protein (NP_683549.1).

More about the AT3G10845 gene

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