LOCUS NM_113468 3947 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Hydroxyproline-rich glycoprotein family
protein (CHUP1), mRNA.
ACCESSION NM_113468
VERSION NM_113468.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 3947)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 3947)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3947)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 3947)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_113468.4.
FEATURES Location/Qualifiers
source 1..3947
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..3947
/gene="CHUP1"
/locus_tag="AT3G25690"
/gene_synonym="Arabidopsis thaliana CHLOROPLAST UNUSUAL
POSITIONING 1; AtCHUP1; CHLOROPLAST UNUSUAL POSITIONING 1"
/note="actin binding protein required for normal
chloroplast positioning"
/db_xref="Araport:AT3G25690"
/db_xref="GeneID:822157"
/db_xref="TAIR:AT3G25690"
CDS 791..3805
/gene="CHUP1"
/locus_tag="AT3G25690"
/gene_synonym="Arabidopsis thaliana CHLOROPLAST UNUSUAL
POSITIONING 1; AtCHUP1; CHLOROPLAST UNUSUAL POSITIONING 1"
/inference="Similar to RNA sequence,
EST:INSD:EL247286.1,INSD:EH953113.1,INSD:AV811751.1,
INSD:EH874300.1,INSD:EL252310.1,INSD:EH866468.1,
INSD:EL010010.1,INSD:EH990948.1,INSD:EL071550.1,
INSD:EH985091.1,INSD:EH809143.1,INSD:EL029682.1,
INSD:EH846378.1,INSD:AV441155.1,INSD:EL318968.1,
INSD:EL210969.1,INSD:EH871807.1,INSD:EL238169.1,
INSD:AV442669.1,INSD:EL321850.1,INSD:AV527460.1,
INSD:EH806647.1,INSD:EH850784.1,INSD:EL128780.1,
INSD:EL042254.1,INSD:EL128720.1,INSD:EL087884.1,
INSD:EG489972.1,INSD:EH939869.1,INSD:EG472239.1,
INSD:EH856456.1,INSD:EH873475.1,INSD:EH812037.1,
INSD:EL151822.1,INSD:EL202908.1,INSD:EG472240.1,
INSD:EL237329.1,INSD:EL006659.1,INSD:AI997040.1,
INSD:EL208693.1,INSD:EH966194.1,INSD:EL101844.1,
INSD:EL275923.1,INSD:EH797041.1,INSD:EL046518.1,
INSD:AV559553.1,INSD:EH905179.1,INSD:EH947122.1,
INSD:DR235614.1,INSD:EH932367.1,INSD:EH898406.1,
INSD:EL026986.1,INSD:EL333663.1,INSD:AV811254.1,
INSD:EG489967.1,INSD:EH973960.1,INSD:EL213558.1,
INSD:EL065646.1,INSD:EH943953.1,INSD:EL209315.1,
INSD:EH970779.1,INSD:EL119203.1,INSD:EL246178.1,
INSD:EH884406.1,INSD:EL320855.1,INSD:EL058700.1,
INSD:EL093578.1,INSD:EL086075.1,INSD:EH974346.1,
INSD:EH898844.1"
/inference="Similar to RNA sequence, mRNA:INSD:AB087408.1"
/note="CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); INVOLVED
IN: chloroplast relocation; LOCATED IN: chloroplast outer
membrane, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: Tetratricopeptide repeat
(TPR)-like superfamily protein (TAIR:AT4G18570.1); Has
95745 Blast hits to 54491 proteins in 2679 species: Archae
- 1109; Bacteria - 12651; Metazoa - 43667; Fungi - 7750;
Plants - 7740; Viruses - 1623; Other Eukaryotes - 21205
(source: NCBI BLink)."
/codon_start=1
/product="Hydroxyproline-rich glycoprotein family protein"
/protein_id="NP_189197.2"
/db_xref="GeneID:822157"
/db_xref="TAIR:AT3G25690"
/db_xref="Araport:AT3G25690"
/translation="MFVRIGFVVAASIAAVTVKRLNVKPSKPSKPSDNGEGGDKEQSV
DPDYNLNDKNLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDDILPEFEDLLSGEIEY
PLPDDDNNLEKAEKERKYEVEMAYNDGELERLKQLVKELEEREVKLEGELLEYYGLKE
QESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIK
ELQRQIQLDANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMEL
KRKNRELQHEKRELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQV
EGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRL
MLEYAGSERGQGDTDLESNYSQPSSPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKK
WGKSKDDSSVQSSPSRSFYGGSPGRLSSSMNKQRGPLESLMIRNAGESVAITTFGQVD
QESPGTPETPNLPRIRTQQQASSPGEGLNSVAASFHVMSKSVDNVLDEKYPAYKDRHK
LAVEREKHIKHKADQARAERFGGNVALPPKLAQLKEKRVVVPSVITATGDQSNESNES
NEGKASENAATVTKMKLVDIEKRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGGPPPP
PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEG
APSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTD
IEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSF
VDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGK
IKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESM
KAFEELRSRAKTESGDNNNNNNNNSNEEESVN"
ORIGIN
1 aaaattgaat tagaaaaaaa attcaatctt tctgttttct tgtatatggt tgttgctatg
61 tagcgtggca acacacctct acttgtacct ggtcccccaa acatctcaac ataatctaaa
121 tctcacattt ttcttatgca aatggaccaa acttatttct tgaatgacct ttaccaaatt
181 ttgagatcac taatctttat attgactaga tttgtctttg ataaatgtct tatctttaac
241 taacttatgt gtttagttca ccgtctagtt tggtaaattg ctataacaca agagacagaa
301 ttcttaatct ttagctttga acttttaatt gagttttttt tcacagctgc ttcttggtca
361 tggcttaaga ccccatctat tacgatacat gtctatttcc tcatctgtct tgagctaaaa
421 acagcgacta ttattggttg ttttttcatt ttatttaatg ctgagatttt tggactctga
481 tgcatgcgac ttgagaggtc cataaagctg ataagatcga attttgtgat gataagtgtc
541 tttttttttt ccttcttttc tttggtggac atagttctgt aaagttttgt cagtacctgg
601 aagtttctct tacagaagca agtgtgttta tccatttgtc ataaggttga tgaacaagat
661 ttggactaga gattgtttga aggaacgatg ggttaagtta gtatcagtag agtgataatt
721 ttaaggagac tttccggttc tgtagatgag acggggaagg gaattgattc ccatttcaag
781 attttaatat atgtttgtcc ggatagggtt tgttgttgct gcttccattg cagcagttac
841 tgttaagcgg ctcaacgtta aaccctccaa accaagcaaa ccatcagata atggcgaagg
901 aggcgacaaa gaacagtctg tggatcccga ctacaatctc aatgacaaga atctgcaaga
961 ggaggaagag gaagaagaag aagaggtgaa actaatcaac agtgtaatca atcagactcg
1021 tggaagtttc tcggactact tagatgatga tatattaccc gagtttgaag atcttttatc
1081 tggtgagatt gagtatccat tgcctgatga tgataataac ttggagaaag ctgagaaaga
1141 gaggaaatat gaagtcgaga tggcttataa cgatggtgag ctcgaacggt taaagcaatt
1201 agttaaggag ctagaagaaa gagaagtgaa acttgaaggt gaattactcg agtattatgg
1261 acttaaagag caagaatcag atatcgttga gttacaaaga cagctcaaga tcaagactgt
1321 tgagattgat atgttaaaca tcactattaa ttctctgcaa gctgagagaa aaaagcttca
1381 agaagagctc tcacaaaacg gtattgtaag aaaggagctt gaagtggcga gaaacaagat
1441 caaggagttg cagaggcaaa tccaactcga tgctaaccag acgaaaggac agttactgtt
1501 gcttaagcag catgtatcaa gtcttcaaat gaaagaagaa gaagctatga ataaagatac
1561 tgaagttgag aggaagctta aagctgtaca ggatttggaa gtgcaagtta tggaactcaa
1621 gagaaaaaat agagagcttc aacatgagaa gagagagtta tccattaaac tcgattcagc
1681 ggaagcaaga attgcaactc tttcaaacat gactgagagc gataaagtgg cgaaagttag
1741 agaagaggtt aacaatttga agcataacaa tgaggatttg ttaaagcaag tggaagggct
1801 tcaaatgaat aggtttagtg aagttgagga attggtttat ctacgttggg tcaatgcatg
1861 tttacggtat gagttaagaa actaccagac accagctggt aaaatctcag ctcgtgactt
1921 aagcaagaac ctaagcccca agtcccaagc aaaagcaaaa cggttaatgt tagagtatgc
1981 tggttcagag cgtggccaag gagataccga cttagaaagc aactattctc aaccttcatc
2041 tccgggaagc gatgatttcg ataatgcttc aatggatagt tccacaagta ggtttagtag
2101 ttttagcaag aagccaggat tgattcagaa acttaagaaa tggggcaaaa gcaaggatga
2161 ttcaagcgtt caatcatcgc cttcaagatc attttacgga ggatcaccgg gaagacttag
2221 ctcgagtatg aataaacaga gaggtccttt agaatctttg atgattagaa acgctggtga
2281 atccgtagcc ataacaacat ttggtcaagt ggatcaagaa tctcctggta cccctgaaac
2341 accgaatctt ccaagaatca gaacacaaca acaagcttct tctccgggtg agggtttgaa
2401 ttccgttgca gcatcgttcc acgtgatgtc taaatcggtt gacaatgttt tggatgagaa
2461 gtatcctgcg tacaaagaca ggcataagtt ggcagttgaa agagagaagc acattaagca
2521 taaagcagat caagcaagag cagagagatt tggcggtaat gtggctttgc ctcctaaact
2581 tgctcaacta aaggagaaaa gggttgttgt tccctctgtg atcacagcca caggtgatca
2641 gtctaacgag tcaaatgaat ctaacgaagg taaagccagc gaaaacgctg caaccgtaac
2701 caaaatgaag cttgtagaca ttgagaaacg acctcctaga gtacctcgcc cgcctccaag
2761 atcagctgga ggtggtaaaa gtactaactt gccttcagca agacctcctt tacctggtgg
2821 tggtccacca ccacctcctc caccacctgg cggtggaccg cctcctccac ctggcggtgg
2881 accacctcca ccaccacctc ctcctggagc acttggaaga ggagcgggag gcgggaacaa
2941 agttcaccga gctcctgagc ttgttgagtt ttatcaatca ttgatgaaac gtgaatcgaa
3001 gaaagaaggt gcaccttctt tgatctcttc aggaactggt aattcttcag cagctaggaa
3061 caatatgatt ggggaaatcg agaaccgatc aacattcctc ttagcagtaa aagcggatgt
3121 ggagacacaa ggggactttg tacagtcgtt agcaactgaa gtccgagctt cttctttcac
3181 cgacatagaa gatctcttgg cgttcgttag ctggctagat gaagagctct ccttcttggt
3241 tgatgaaagg gcagttctta aacactttga ctggccagaa ggtaaagctg atgcgctacg
3301 agaagcagct tttgaatatc aagatcttat gaaactggag aagcaagtta cgtcctttgt
3361 tgatgatcct aatctctctt gtgaacctgc tttgaagaag atgtacaagt tgctagagaa
3421 ggttgaacaa agtgtatacg cgcttttacg tacgagagac atggcgattt cacgatataa
3481 agaattcggg attccagttg attggttatc tgatactggc gtcgtaggaa agatcaagct
3541 ttcgtcagtc cagctcgcga agaagtacat gaaacgagta gcttatgagc tagattcagt
3601 gagcggatcc gataaagatc cgaacagaga gttcttgctt ctccaaggtg ttcgtttcgc
3661 gtttagagtc catcagtttg ctggagggtt tgatgcagag agcatgaaag catttgagga
3721 acttagaagc agagccaaaa ctgaaagtgg agacaataat aataataata ataataatag
3781 caatgaagaa gaatctgtaa actgagtttt attacttctc tctgtatcat ttgtatcaca
3841 tacttcattt atagtacagt gaaatttata gattcttgta aaaagaaata caacattttt
3901 ctttgacaaa aaaaaaagaa atacaatttt tttgtgtgta ggtttgc
//