LOCUS EDL20462 260 aa linear ROD 26-JUL-2016
DEFINITION TATA box binding protein, isoform CRA_c [Mus musculus].
ACCESSION EDL20462
VERSION EDL20462.1
DBLINK BioProject: PRJNA11785
BioSample: SAMN03004379
DBSOURCE accession CH466630.2
KEYWORDS .
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (residues 1 to 260)
AUTHORS Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O., Miklos,G.L.,
Wides,R., Halpern,A., Li,P.W., Sutton,G.G., Nadeau,J.,
Salzberg,S.L., Holt,R.A., Kodira,C.D., Lu,F., Chen,L., Deng,Z.,
Evangelista,C.C., Gan,W., Heiman,T.J., Li,J., Li,Z., Merkulov,G.V.,
Milshina,N.V., Naik,A.K., Qi,R., Shue,B.C., Wang,A., Wang,J.,
Wang,X., Yan,X., Ye,J., Yooseph,S., Zhao,Q., Zheng,L., Zhu,S.C.,
Biddick,K., Bolanos,R., Delcher,A.L., Dew,I.M., Fasulo,D.,
Flanigan,M.J., Huson,D.H., Kravitz,S.A., Miller,J.R., Mobarry,C.M.,
Reinert,K., Remington,K.A., Zhang,Q., Zheng,X.H., Nusskern,D.R.,
Lai,Z., Lei,Y., Zhong,W., Yao,A., Guan,P., Ji,R.R., Gu,Z.,
Wang,Z.Y., Zhong,F., Xiao,C., Chiang,C.C., Yandell,M.,
Wortman,J.R., Amanatides,P.G., Hladun,S.L., Pratts,E.C.,
Johnson,J.E., Dodson,K.L., Woodford,K.J., Evans,C.A., Gropman,B.,
Rusch,D.B., Venter,E., Wang,M., Smith,T.J., Houck,J.T.,
Tompkins,D.E., Haynes,C., Jacob,D., Chin,S.H., Allen,D.R.,
Dahlke,C.E., Sanders,R., Li,K., Liu,X., Levitsky,A.A.,
Majoros,W.H., Chen,Q., Xia,A.C., Lopez,J.R., Donnelly,M.T.,
Newman,M.H., Glodek,A., Kraft,C.L., Nodell,M., Ali,F., An,H.J.,
Baldwin-Pitts,D., Beeson,K.Y., Cai,S., Carnes,M., Carver,A.,
Caulk,P.M., Center,A., Chen,Y.H., Cheng,M.L., Coyne,M.D.,
Crowder,M., Danaher,S., Davenport,L.B., Desilets,R., Dietz,S.M.,
Doup,L., Dullaghan,P., Ferriera,S., Fosler,C.R., Gire,H.C.,
Gluecksmann,A., Gocayne,J.D., Gray,J., Hart,B., Haynes,J.,
Hoover,J., Howland,T., Ibegwam,C., Jalali,M., Johns,D., Kline,L.,
Ma,D.S., MacCawley,S., Magoon,A., Mann,F., May,D., McIntosh,T.C.,
Mehta,S., Moy,L., Moy,M.C., Murphy,B.J., Murphy,S.D., Nelson,K.A.,
Nuri,Z., Parker,K.A., Prudhomme,A.C., Puri,V.N., Qureshi,H.,
Raley,J.C., Reardon,M.S., Regier,M.A., Rogers,Y.H., Romblad,D.L.,
Schutz,J., Scott,J.L., Scott,R., Sitter,C.D., Smallwood,M.,
Sprague,A.C., Stewart,E., Strong,R.V., Suh,E., Sylvester,K.,
Thomas,R., Tint,N.N., Tsonis,C., Wang,G., Wang,G., Williams,M.S.,
Williams,S.M., Windsor,S.M., Wolfe,K., Wu,M.M., Zaveri,J.,
Chaturvedi,K., Gabrielian,A.E., Ke,Z., Sun,J., Subramanian,G.,
Venter,J.C., Pfannkoch,C.M., Barnstead,M. and Stephenson,L.D.
TITLE A comparison of whole-genome shotgun-derived mouse chromosome 16
and the human genome
JOURNAL Science 296 (5573), 1661-1671 (2002)
PUBMED 12040188
REFERENCE 2 (residues 1 to 260)
AUTHORS Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O. and Venter,J.C.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville,
MD 20850, USA
REFERENCE 3 (residues 1 to 260)
AUTHORS Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O. and Venter,J.C.
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2005) Celera Genomics, 45 W. Gude Dr., Rockville,
MD 20850, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..260
/organism="Mus musculus"
/strain="mixed"
/db_xref="taxon:10090"
/chromosome="17"
Protein 1..260
/product="TATA box binding protein, isoform CRA_c"
Region 139..256
/region_name="TBP_TLF"
/note="TATA box binding protein (TBP): Present in archaea
and eukaryotes, TBPs are transcription factors that
recognize promoters and initiate transcription. TBP has
been shown to be an essential component of three different
transcription initiation complexes:...; cl08263"
/db_xref="CDD:447593"
Site order(143..144,146,173..174,178,180,187,189,193,195,197,
199,209..210,215,226,228,230,234)
/site_type="other"
/note="DNA interaction surface [nucleotide binding]"
/db_xref="CDD:238352"
Site order(158,165..167,169,174,180,182)
/site_type="other"
/note="TFIIA interaction surface [polypeptide binding]"
/db_xref="CDD:238352"
Site order(173,214..215,220,251..252)
/site_type="other"
/note="NC2 interaction surface [polypeptide binding]"
/db_xref="CDD:238352"
CDS 1..260
/gene="Tbp"
/locus_tag="mCG_4503"
/coded_by="join(CH466630.2:1843486..1843539,
CH466630.2:1844685..1845058,CH466630.2:1847754..1847841,
CH466630.2:1853953..1854044,CH466630.2:1856039..1856133,
CH466630.2:1857127..1857206)"
/note="gene_id=mCG4503.3 transcript_id=mCT185577.0
protein_id=mCP106835.0 isoform=CRA_c"
/db_xref="GeneID:21374"
ORIGIN
1 mdqnnslppy aqglaspqga mtpgipifsp mmpygtgltp qpiqntnsls ileeqqrqqq
61 qqqqqqqqqq avataaasvq qstsqqptqg asgqtpqlfh sqtlttaplp gttplypspm
121 tpmtpitpat pasessgivp qlqnivstvn lgckldlkti alrarnaeyn pkrfaavimr
181 ireprttali fssgkmvctg aksyepelfp gliyrmikpr ivllifvsgk vvltgakvra
241 eiyeafeniy pilkgfrktt
//