LOCUS BC163902 3032 bp mRNA linear VRT 11-MAY-2009
DEFINITION Danio rerio bromodomain-containing 2a, mRNA (cDNA clone MGC:195329
IMAGE:9039033), complete cds.
ACCESSION BC163902
VERSION BC163902.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 3032)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3032)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-APR-2008) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Harvard
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCY Plate: 5 Row: P Column: 7.
FEATURES Location/Qualifiers
source 1..3032
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:195329 IMAGE:9039033"
/tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo
5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole
embryo 48 hpf, whole adult fish"
/clone_lib="NIH_ZGC_38"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO reverse; Clone identification
sequence tag: AGTAGAAC"
gene 1..3032
/gene="brd2a"
/gene_synonym="brd2"
/gene_synonym="fi85h05"
/gene_synonym="wu:fi85h05"
/db_xref="GeneID:30445"
/db_xref="ZFIN:ZDB-GENE-990415-248"
CDS 78..2576
/gene="brd2a"
/gene_synonym="brd2"
/gene_synonym="fi85h05"
/gene_synonym="wu:fi85h05"
/codon_start=1
/product="bromodomain-containing 2a"
/protein_id="AAI63902.1"
/db_xref="GeneID:30445"
/db_xref="ZFIN:ZDB-GENE-990415-248"
/translation="METALSPPFDSSLGGCDGMQGLTMMEQTISGPGKRIRKPSLLYE
GFEGPALPHIAQSGPPQPAVRDPSRQGRMTNQLQFLQKALVKTLWRHHFAWPFHEPVD
AAKLNLPDYYNIIKQPMDMGTIKKRLENNYYRSASECMQDFNTMFTNCYIYNKPTDDI
VLMAQSLEKAFLQKVAQMPEVEEEIPAPVPRGKQSKPKKGQKLFSGGITTAHQVPAIS
SLSQLAYSPPTPDTPDSVLSTPPQTLITKNFPPPPLHSTPALLGLPPTQPTAKKKGVK
RKADTTTPTTTVMPLTLGVGGMGMGMGMGMSMGMGMGMGLGGDSPLTLSNMGMDSKQS
LSLSLGMSLEDKVPARRGGSGRPIKPPRKDLPDSQNQHQPVRRGKLSQQLRYCSTILK
ELLSKKHTAYAWPFYKPVDVSSLGLHDYYDIIMYPMDLSTIKRKMDHREYRDALQFAA
DVRLMFSNCYKYNPPDHDVVAMARRLQDVFEFRFAKMPDEPLESLPPASLGGGLGGDS
SSSSSSSSSSSESDVSSESESESSPSSDSEEERAHRLAQLQEQLRAVHEQLAALSSTP
IIKPKKKKEKKDKKKKKKPEKHKRSRSVIEDEVVMRPAKIPKLPKTPKSRSNSKAATS
TQSKKSSNKKSNKSKSSKKAQPTFFPPPLSHSGLTPHYDSEEEEETSPMSYDEKRQLS
LDINRLPGEKLGRVVHIIQSREPSLRDTNPEEIEIDFETLKPSTLRELERYVMMCLRK
KPRKPFVAIKGSAGKSREELALEKKRELERRLQDVSGQLNSVKKPQKTKAEKPSAVEP
HAVASRLSASSSSSDSSSSSSSSSSSDTSESDSD"
ORIGIN
1 aaagtcagaa aaacaaggcc gcgaaactcg gatattcgag cgaaaccggt ttataaacag
61 aatccggatc catcccgatg gaaacggctc ttagcccgcc ctttgacagc tccctgggcg
121 ggtgcgacgg catgcagggg ctcaccatga tggagcagac catctctgga cccggcaaac
181 gcatccgcaa gccgtcgctg ctgtacgaag ggtttgaggg acccgctctg ccacacatag
241 ctcaatctgg accccctcag cccgctgtgc gggacccctc aaggcagggc cgaatgacca
301 atcagctgca gttcctccag aaggctttag tgaagacgct gtggaggcat cacttcgcct
361 ggcctttcca cgagcctgta gatgctgcca aacttaacct tcctgattat tataacatca
421 ttaagcagcc tatggacatg gggaccatca agaagcgact ggagaacaat tattaccgca
481 gtgccagcga gtgcatgcag gatttcaaca ccatgtttac caactgctac atctacaaca
541 agcccacaga tgatatcgtc ctgatggctc agtctctaga gaaggctttc ctgcagaagg
601 ttgcacagat gcctgaagtg gaggaagaga ttcctgcacc tgtccccaga ggaaaacaaa
661 gcaaaccaaa aaaaggccaa aaattattct caggtgggat cacgacagct catcaggttc
721 ctgccatatc ttctctctct cagctggctt actctcctcc aactccagac accccagact
781 cagtgctttc tacgccacca cagacgctta taaccaagaa ctttcctcct cctccgttac
841 acagcacgcc tgcgcttttg ggcctcccgc ctacacaacc cactgctaag aaaaaaggcg
901 ttaaacgcaa ggcagacacg accaccccca ccaccacagt catgcccctc actttgggtg
961 taggaggcat ggggatgggt atgggcatgg gaatgagtat gggaatgggc atggggatgg
1021 gtctgggtgg agactcccca ctcaccctct ccaatatggg catggattcc aaacagagcc
1081 tgtccctcag cctgggcatg tctctggagg acaaagttcc agccaggcga ggtggcagtg
1141 gccggcccat caaaccacct cggaaagact tgcccgactc gcagaaccaa catcagccag
1201 tgcggcgagg aaagctgagc cagcagctcc gatactgcag caccatcctc aaagagctgc
1261 tgtccaagaa gcatacggcc tacgcctggc ctttctacaa gccagtggac gtgtcttcac
1321 tgggactcca cgattattac gatatcatca tgtatcccat ggatctgagc acaattaaga
1381 ggaagatgga tcatcgggag tacagagatg cactgcagtt tgctgctgac gtcaggctca
1441 tgttctccaa ctgttacaag tacaatcctc cagatcacga tgtggtggcc atggcccgga
1501 gactgcagga cgtgttcgag ttccgcttcg ccaagatgcc tgacgagccc ctggagtctc
1561 tcccacctgc atccctgggc ggcggtctag gcggtgactc ctcctcttcc tcctcctctt
1621 cctcctcgtc ctcagagagt gacgtgagca gcgagagtga gagcgagagc agcccgagct
1681 ctgacagtga ggaggagaga gcgcatcgcc tggcccagct tcaggaacag ttgagggccg
1741 ttcatgagca gctggcggcg ctgtcctcca cgcccatcat caaacccaag aagaagaagg
1801 agaagaaaga caagaagaag aaaaagaagc cggagaagca taagcgaagc aggagcgtga
1861 ttgaggatga ggtggtcatg cggccggcca agatccccaa actccccaag acaccaaaga
1921 gcaggagcaa cagcaaagcg gcgacgtcaa cgcagagcaa gaagagctca aacaagaaga
1981 gcaacaagag caagtcatca aagaaagctc agcccacgtt tttcccaccg ccactgagcc
2041 acagtggcct cacacctcac tacgactccg aggaagagga ggaaaccagt cccatgagct
2101 acgacgagaa gcggcagctc agtctggaca tcaaccgtct gccgggggaa aaactgggcc
2161 gcgtggttca catcatccag tccagagagc cctcgctgag agacaccaac cctgaggaga
2221 tcgagatcga cttcgagacc ctcaaaccat ccacactgag agagctggag cgctacgtaa
2281 tgatgtgctt acgaaagaaa ccacgcaaac ccttcgtggc cataaaaggc tctgcaggta
2341 aatctcgtga ggagctggct ctggagaaga agagagagct ggagcggaga ctgcaggacg
2401 tcagcggaca gctcaactcc gtcaagaaac cacagaaaac caaagcggag aagccgtcag
2461 cggtggagcc tcacgcagtg gcgtcacgtc tcagcgccag cagctccagc tcagactctt
2521 catcatcctc ctcctcttcc tcatcctctg acacaagtga atcagactca gactgagcag
2581 atgatgatga tgatgatgat gatagaaaaa aaaacatgca ctccatccca gatcacgaca
2641 tgcagagaga gacaaataaa gaacaggctt tctctttaca gagaattctg ggaaaaataa
2701 agggtggagg aggagctgat gggggaaatc agagcagggt gttgtctgat tggagactgg
2761 tttccattag ttcatcctcc tccgctctgt gtatatacct gtataaagat atataaatat
2821 ctatttttct tttataaaga agaattttaa gcaattccct ggtagggaag acaatgattt
2881 tctttttgtg aatcttttat gttgctttct ttctctcctc ctcttttttt cgtgtaaact
2941 atgaattatt tgtcctaaag aaaacaaaag gcttggagtg gaaactgctg tcacttgtgt
3001 ttgcatgagc gagagagagg gtgggtgtgt gt
//