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Danio rerio bromodomain-containing 2a, mRNA (cDNA clone MGC:195329 IMAGE:9039033), complete cds

GenBank: BC163902.1

FASTA Graphics 

LOCUS       BC163902                3032 bp    mRNA    linear   VRT 11-MAY-2009
DEFINITION  Danio rerio bromodomain-containing 2a, mRNA (cDNA clone MGC:195329
            IMAGE:9039033), complete cds.
ACCESSION   BC163902
VERSION     BC163902.1
KEYWORDS    MGC.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3032)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2008) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Harvard
            cDNA Library Preparation: British Columbia Cancer Research Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRCY Plate: 5 Row: P Column: 7.
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /clone="MGC:195329 IMAGE:9039033"
                     /tissue_type="Pooled, Harvard Zebrafish Pool, whole embryo
                     5 somites, whole embryo 20 hpf, whole embryo 24 hpf, whole
                     embryo 48 hpf, whole adult fish"
                     /clone_lib="NIH_ZGC_38"
                     /lab_host="DH10B"
                     /note="Vector: pCR4-TOPO reverse; Clone identification
                     sequence tag: AGTAGAAC"
     gene            1..3032
                     /gene="brd2a"
                     /gene_synonym="brd2"
                     /gene_synonym="fi85h05"
                     /gene_synonym="wu:fi85h05"
                     /db_xref="GeneID:30445"
                     /db_xref="ZFIN:ZDB-GENE-990415-248"
     CDS             78..2576
                     /gene="brd2a"
                     /gene_synonym="brd2"
                     /gene_synonym="fi85h05"
                     /gene_synonym="wu:fi85h05"
                     /codon_start=1
                     /product="bromodomain-containing 2a"
                     /protein_id="AAI63902.1"
                     /db_xref="GeneID:30445"
                     /db_xref="ZFIN:ZDB-GENE-990415-248"
                     /translation="METALSPPFDSSLGGCDGMQGLTMMEQTISGPGKRIRKPSLLYE
                     GFEGPALPHIAQSGPPQPAVRDPSRQGRMTNQLQFLQKALVKTLWRHHFAWPFHEPVD
                     AAKLNLPDYYNIIKQPMDMGTIKKRLENNYYRSASECMQDFNTMFTNCYIYNKPTDDI
                     VLMAQSLEKAFLQKVAQMPEVEEEIPAPVPRGKQSKPKKGQKLFSGGITTAHQVPAIS
                     SLSQLAYSPPTPDTPDSVLSTPPQTLITKNFPPPPLHSTPALLGLPPTQPTAKKKGVK
                     RKADTTTPTTTVMPLTLGVGGMGMGMGMGMSMGMGMGMGLGGDSPLTLSNMGMDSKQS
                     LSLSLGMSLEDKVPARRGGSGRPIKPPRKDLPDSQNQHQPVRRGKLSQQLRYCSTILK
                     ELLSKKHTAYAWPFYKPVDVSSLGLHDYYDIIMYPMDLSTIKRKMDHREYRDALQFAA
                     DVRLMFSNCYKYNPPDHDVVAMARRLQDVFEFRFAKMPDEPLESLPPASLGGGLGGDS
                     SSSSSSSSSSSESDVSSESESESSPSSDSEEERAHRLAQLQEQLRAVHEQLAALSSTP
                     IIKPKKKKEKKDKKKKKKPEKHKRSRSVIEDEVVMRPAKIPKLPKTPKSRSNSKAATS
                     TQSKKSSNKKSNKSKSSKKAQPTFFPPPLSHSGLTPHYDSEEEEETSPMSYDEKRQLS
                     LDINRLPGEKLGRVVHIIQSREPSLRDTNPEEIEIDFETLKPSTLRELERYVMMCLRK
                     KPRKPFVAIKGSAGKSREELALEKKRELERRLQDVSGQLNSVKKPQKTKAEKPSAVEP
                     HAVASRLSASSSSSDSSSSSSSSSSSDTSESDSD"
ORIGIN      
        1 aaagtcagaa aaacaaggcc gcgaaactcg gatattcgag cgaaaccggt ttataaacag
       61 aatccggatc catcccgatg gaaacggctc ttagcccgcc ctttgacagc tccctgggcg
      121 ggtgcgacgg catgcagggg ctcaccatga tggagcagac catctctgga cccggcaaac
      181 gcatccgcaa gccgtcgctg ctgtacgaag ggtttgaggg acccgctctg ccacacatag
      241 ctcaatctgg accccctcag cccgctgtgc gggacccctc aaggcagggc cgaatgacca
      301 atcagctgca gttcctccag aaggctttag tgaagacgct gtggaggcat cacttcgcct
      361 ggcctttcca cgagcctgta gatgctgcca aacttaacct tcctgattat tataacatca
      421 ttaagcagcc tatggacatg gggaccatca agaagcgact ggagaacaat tattaccgca
      481 gtgccagcga gtgcatgcag gatttcaaca ccatgtttac caactgctac atctacaaca
      541 agcccacaga tgatatcgtc ctgatggctc agtctctaga gaaggctttc ctgcagaagg
      601 ttgcacagat gcctgaagtg gaggaagaga ttcctgcacc tgtccccaga ggaaaacaaa
      661 gcaaaccaaa aaaaggccaa aaattattct caggtgggat cacgacagct catcaggttc
      721 ctgccatatc ttctctctct cagctggctt actctcctcc aactccagac accccagact
      781 cagtgctttc tacgccacca cagacgctta taaccaagaa ctttcctcct cctccgttac
      841 acagcacgcc tgcgcttttg ggcctcccgc ctacacaacc cactgctaag aaaaaaggcg
      901 ttaaacgcaa ggcagacacg accaccccca ccaccacagt catgcccctc actttgggtg
      961 taggaggcat ggggatgggt atgggcatgg gaatgagtat gggaatgggc atggggatgg
     1021 gtctgggtgg agactcccca ctcaccctct ccaatatggg catggattcc aaacagagcc
     1081 tgtccctcag cctgggcatg tctctggagg acaaagttcc agccaggcga ggtggcagtg
     1141 gccggcccat caaaccacct cggaaagact tgcccgactc gcagaaccaa catcagccag
     1201 tgcggcgagg aaagctgagc cagcagctcc gatactgcag caccatcctc aaagagctgc
     1261 tgtccaagaa gcatacggcc tacgcctggc ctttctacaa gccagtggac gtgtcttcac
     1321 tgggactcca cgattattac gatatcatca tgtatcccat ggatctgagc acaattaaga
     1381 ggaagatgga tcatcgggag tacagagatg cactgcagtt tgctgctgac gtcaggctca
     1441 tgttctccaa ctgttacaag tacaatcctc cagatcacga tgtggtggcc atggcccgga
     1501 gactgcagga cgtgttcgag ttccgcttcg ccaagatgcc tgacgagccc ctggagtctc
     1561 tcccacctgc atccctgggc ggcggtctag gcggtgactc ctcctcttcc tcctcctctt
     1621 cctcctcgtc ctcagagagt gacgtgagca gcgagagtga gagcgagagc agcccgagct
     1681 ctgacagtga ggaggagaga gcgcatcgcc tggcccagct tcaggaacag ttgagggccg
     1741 ttcatgagca gctggcggcg ctgtcctcca cgcccatcat caaacccaag aagaagaagg
     1801 agaagaaaga caagaagaag aaaaagaagc cggagaagca taagcgaagc aggagcgtga
     1861 ttgaggatga ggtggtcatg cggccggcca agatccccaa actccccaag acaccaaaga
     1921 gcaggagcaa cagcaaagcg gcgacgtcaa cgcagagcaa gaagagctca aacaagaaga
     1981 gcaacaagag caagtcatca aagaaagctc agcccacgtt tttcccaccg ccactgagcc
     2041 acagtggcct cacacctcac tacgactccg aggaagagga ggaaaccagt cccatgagct
     2101 acgacgagaa gcggcagctc agtctggaca tcaaccgtct gccgggggaa aaactgggcc
     2161 gcgtggttca catcatccag tccagagagc cctcgctgag agacaccaac cctgaggaga
     2221 tcgagatcga cttcgagacc ctcaaaccat ccacactgag agagctggag cgctacgtaa
     2281 tgatgtgctt acgaaagaaa ccacgcaaac ccttcgtggc cataaaaggc tctgcaggta
     2341 aatctcgtga ggagctggct ctggagaaga agagagagct ggagcggaga ctgcaggacg
     2401 tcagcggaca gctcaactcc gtcaagaaac cacagaaaac caaagcggag aagccgtcag
     2461 cggtggagcc tcacgcagtg gcgtcacgtc tcagcgccag cagctccagc tcagactctt
     2521 catcatcctc ctcctcttcc tcatcctctg acacaagtga atcagactca gactgagcag
     2581 atgatgatga tgatgatgat gatagaaaaa aaaacatgca ctccatccca gatcacgaca
     2641 tgcagagaga gacaaataaa gaacaggctt tctctttaca gagaattctg ggaaaaataa
     2701 agggtggagg aggagctgat gggggaaatc agagcagggt gttgtctgat tggagactgg
     2761 tttccattag ttcatcctcc tccgctctgt gtatatacct gtataaagat atataaatat
     2821 ctatttttct tttataaaga agaattttaa gcaattccct ggtagggaag acaatgattt
     2881 tctttttgtg aatcttttat gttgctttct ttctctcctc ctcttttttt cgtgtaaact
     2941 atgaattatt tgtcctaaag aaaacaaaag gcttggagtg gaaactgctg tcacttgtgt
     3001 ttgcatgagc gagagagagg gtgggtgtgt gt
//
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