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Homo sapiens AF4/FMR2 family, member 3, mRNA (cDNA clone MGC:168192 IMAGE:9020569), complete cds

GenBank: BC136579.1

FASTA Graphics 

LOCUS       BC136579                3742 bp    mRNA    linear   PRI 11-FEB-2009
DEFINITION  Homo sapiens AF4/FMR2 family, member 3, mRNA (cDNA clone MGC:168192
            IMAGE:9020569), complete cds.
ACCESSION   BC136579
VERSION     BC136579.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3742)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3742)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2007) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Ambion
            cDNA Library Preparation: British Columbia Cancer Research Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: LLDM Plate: 670 Row: n Column: 23
            single stranded.
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:168192 IMAGE:9020569"
                     /tissue_type="Testicle, PCR rescued clones"
                     /clone_lib="NIH_MGC_382"
                     /lab_host="DH10B"
                     /note="Vector: pCR4-TOPO with reversed insert; Clone
                     identification sequence tag: ACCTTCTG"
     gene            1..3742
                     /gene="AFF3"
                     /gene_synonym="MLLT2-like"
                     /db_xref="GeneID:3899"
                     /db_xref="HGNC:HGNC:6473"
                     /db_xref="MIM:601464"
     CDS             20..3700
                     /gene="AFF3"
                     /gene_synonym="MLLT2-like"
                     /codon_start=1
                     /product="AF4/FMR2 family, member 3"
                     /protein_id="AAI36580.1"
                     /db_xref="GeneID:3899"
                     /db_xref="HGNC:HGNC:6473"
                     /db_xref="MIM:601464"
                     /translation="MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRNQETQQDDG
                     TFNSSYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQ
                     TPVNKIDEHFVADSRAQNQPSSICSTTTSTPAAVPVQQSKRGTMGWQKAGHPPSDGQQ
                     RATQQGSLRTLLGDGVGRQQPRAKQVCNVEVGLQTQERPPAMAAKHSSSGHCVQNFPP
                     SLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSSETSVHCTSYRGVPASKPEPAR
                     AKAKLSKFSIPKQGEESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNK
                     DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRAL
                     SDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGSKP
                     PHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCG
                     KVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPA
                     VPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEPAAADALGTSVVVPPEP
                     TKTRPCGNNRASHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLE
                     SEQEEYPLSKAQTVAASASSGNDQRLKEAAANGGSGPRAPVGSINARTTSDIAKELEE
                     QFYTLVPFGRNELLSPLKDSDEIRSLWVKIDLTLLSRIPEHLPQEPGVLSAPATKDSE
                     SAPPSHTSDTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN
                     HCNMNINSVAIPINKNEKMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSS
                     KKPKADSQLQPHGGDLTKAAHNNSENIPLHKSRPQTKPWSPGSNGHRDCKRQKLVFDD
                     MPRSADYFMQEAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYT
                     MYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSK
                     ALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPSPASSVGSQGSLSNASALSPST
                     IVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSS
                     MEHLVQYSQQGLHWLRNSAHLS"
ORIGIN      
        1 gacgctgaca cctcccacca tggacagctt cgacttagcc ctgctccagg aatgggacct
       61 cgagtcactg tgtgtctatg aaccagatag aaatgcatta cggaggaaag aacgagaaag
      121 aagaaatcaa gaaactcaac aggatgatgg cacgtttaat tctagttact ctctcttcag
      181 tgagccctac aagactaaca agggggatga actctccaac cggatccaga acactttagg
      241 caattatgat gaaatgaaag actttttaac tgatagatcc aatcagagtc atctcgttgg
      301 agttcccaaa cctggggttc ctcagactcc tgtgaacaag atcgatgaac attttgttgc
      361 agattcaaga gcccagaacc agccctcgtc tatctgtagc actacaactt ccacaccagc
      421 agctgtcccc gtgcagcaga gtaagagagg cactatgggc tggcagaagg ctgggcaccc
      481 accctctgac ggccaacaga gagcaacaca acagggctct ctcaggacct tgcttggaga
      541 tggtgttggc agacagcagc ctcgggccaa acaagtgtgc aatgtggagg tgggccttca
      601 gacccaggag aggccacctg ccatggcggc caagcacagc agcagcggac actgtgttca
      661 gaactttcct ccatccctag cttcaaaacc cagcctggtc cagcagaaac cgaccgcgta
      721 tgtgaggcca atggacggcc aagatcaggc ccctgatgag tctcctaagc tgaagtcgtc
      781 ttcggaaacc agcgtgcact gcacatcata caggggagtc cctgccagca agccggagcc
      841 tgccagagcc aaggccaagc tctccaagtt cagcatcccc aagcaggggg aggagagtag
      901 atctggagaa accaacagct gtgttgaaga aataatccgg gagatgacct ggcttccacc
      961 actttctgct attcaagcac ctggcaaagt ggaaccaacc aaatttccat ttccaaataa
     1021 ggactctcag cttgtatcct ctggacacaa taatccaaag aaaggtgatg cagagccaga
     1081 gagtccagac aatggcacat cgaatacatc aatgctggaa gatgacctta agctaagcag
     1141 tgatgaagag gagaatgaac agcaggcagc tcagagaacg gctctccgcg ctctctctga
     1201 cagcgccgtg gtccagcagc ccaactgcag aacctcggtg ccttccagca agggcagcag
     1261 cagcagcagc agcagcggca gcagcagctc ctccagcgac tcagagagca gctccggatc
     1321 tgactcggag accgagagca gctccagcga gagtgagggc agcaagcccc cccacttctc
     1381 cagccccgag gctgaaccgg catcctctaa caagtggcag ctggataaat ggctaaacaa
     1441 agttaatccc cacaagcctc ctattctgat ccaaaatgaa agccacgggt cagagagcaa
     1501 tcagtactac aacccggtga aagaggacgt ccaggactgt gggaaagtcc ccgacgtttg
     1561 ccagcccagc ctgagagaga aggagatcaa gagcacttgc aaggaggagc aaaggccaag
     1621 gacagccaac aaggcccctg ggagtaaagg cgtgaagcag aagtccccgc ccgcggccgt
     1681 ggccgtggcg gtgagcgcag ccgccccgcc acccgcagtg ccctgtgcgc ccgcggagaa
     1741 cgcgcccgcg cctgcccgga ggtccgcggg caagaagccc accaggcgca ccgagaggac
     1801 ctcagccggg gacggcgcca actgccaccg gcccgaggag cccgcggccg cggacgcgct
     1861 ggggacgagc gtggtggtcc ccccggagcc caccaaaacc aggccctgtg gcaacaacag
     1921 agcgagccac cgcaaggagc tgcgctcctc cgtgacctgc gagaagcgcc gcacgcgggg
     1981 gctaagcagg atcgtcccca aatccaagga gttcattgag acagagtcgt catcttcatc
     2041 ctcctcctcg gactccgacc tggagtccga gcaggaggag taccctctgt ccaaagcaca
     2101 gaccgtggct gcctctgcct cctccgggaa tgatcagagg ctgaaggagg ccgctgccaa
     2161 cgggggcagt ggtcctaggg cccctgtagg ctccatcaac gccaggacca ccagtgacat
     2221 cgccaaggag ctggaggagc agttctacac actggtcccc tttggccgga acgaacttct
     2281 ctcccctcta aaggacagtg atgagatcag gtctctctgg gtcaaaatcg acctgaccct
     2341 cctgtccagg atcccagaac acctgcccca ggagccaggg gtattgagcg cccctgccac
     2401 caaggactct gagagcgcac cgcccagcca cacctcggac acacctgcag aaaaggcttt
     2461 gccaaaatcc aagaggaaac gcaagtgtga caacgaagac gactacaggg agatcaagaa
     2521 gtcccaggga gagaaagaca gctcttcaag actggccacc tccaccagta atactttgtc
     2581 tgcaaaccac tgcaacatga acatcaacag tgtggcaata ccaataaata aaaatgaaaa
     2641 aatgcttcgg tcgcccatct cacccctctc tgatgcatct aaacacaaat acaccagcga
     2701 ggacttaact tcttccagcc gacctaatgg caacagtttg tttacttcag cctcttccag
     2761 caaaaagcct aaggccgaca gccagctgca gcctcacggc ggagacctca cgaaagcagc
     2821 tcacaacaat tctgaaaaca ttcccctcca caagtcacgg ccgcagacga agccgtggtc
     2881 tccaggctcc aacggccaca gggactgcaa gaggcagaaa cttgtcttcg atgatatgcc
     2941 tcgcagtgcc gattatttta tgcaagaagc taaacgaatg aagcataaag cagatgcaat
     3001 ggtggaaaag tttggaaagg ctttgaacta tgctgaagca gcattgtcgt ttatcgagtg
     3061 tggaaatgca atggaacaag gccccatgga atccaaatct ccttatacga tgtattcaga
     3121 aacagtagag ctcatcaggt atgctatgag actaaaaacc cactcaggcc ccaatgccac
     3181 accagaagac aaacaactgg ctgcattatg ttaccgatgc ctggccctcc tgtactggcg
     3241 gatgtttcga ctcaaaaggg accacgctgt aaagtattca aaagcactaa tcgactattt
     3301 caagaactca tctaaagccg cccaagcccc atctccgtgg ggggccagtg gaaagagcac
     3361 tggaacccca tcccccatgt ctcccaaccc ctctcccgcc agctccgtgg ggtctcaggg
     3421 cagcctctcc aacgccagcg ccctgtcccc gtcgaccatc gtcagcatcc cacagcgcat
     3481 ccaccagatg gcggccaacc acgtcagcat caccaacagc atcctgcaca gctacgacta
     3541 ctgggagatg gccgacaacc tggccaagga aaaccgagaa ttcttcaacg acctggatct
     3601 gctcatgggg ccggtcaccc tgcacagcag catggagcac ctggtccagt actcccaaca
     3661 gggcctgcac tggctgcgga acagcgccca cctgtcatag ggacctcacc ctggggccag
     3721 agtgggctct ggtctccaca ga
//
20..3700
/gene="AFF3"
/gene_synonym="MLLT2-like"
/codon_start=1
/product="AF4/FMR2 family, member 3"
/protein_id="AAI36580.1"
/db_xref="GeneID:3899"
/db_xref="HGNC:HGNC:6473"
/db_xref="MIM:601464"
/translation="MDSFDLALLQEWDLESLCVYEPDRNALRRKERERRNQETQQDDG
TFNSSYSLFSEPYKTNKGDELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPGVPQ
TPVNKIDEHFVADSRAQNQPSSICSTTTSTPAAVPVQQSKRGTMGWQKAGHPPSDGQQ
RATQQGSLRTLLGDGVGRQQPRAKQVCNVEVGLQTQERPPAMAAKHSSSGHCVQNFPP
SLASKPSLVQQKPTAYVRPMDGQDQAPDESPKLKSSSETSVHCTSYRGVPASKPEPAR
AKAKLSKFSIPKQGEESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNK
DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRAL
SDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGSKP
PHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCG
KVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPA
VPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEPAAADALGTSVVVPPEP
TKTRPCGNNRASHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLE
SEQEEYPLSKAQTVAASASSGNDQRLKEAAANGGSGPRAPVGSINARTTSDIAKELEE
QFYTLVPFGRNELLSPLKDSDEIRSLWVKIDLTLLSRIPEHLPQEPGVLSAPATKDSE
SAPPSHTSDTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSAN
HCNMNINSVAIPINKNEKMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSS
KKPKADSQLQPHGGDLTKAAHNNSENIPLHKSRPQTKPWSPGSNGHRDCKRQKLVFDD
MPRSADYFMQEAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYT
MYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSK
ALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPSPASSVGSQGSLSNASALSPST
IVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSS
MEHLVQYSQQGLHWLRNSAHLS"
Feature BC136579 : 1 segment
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