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Homo sapiens mRNA; cDNA DKFZp564I1922 (from clone DKFZp564I1922); partial cds

GenBank: AL049946.1

FASTA Graphics 

LOCUS       AL049946                2353 bp    mRNA    linear   PRI 26-JUL-2016
DEFINITION  Homo sapiens mRNA; cDNA DKFZp564I1922 (from clone DKFZp564I1922);
            partial cds.
ACCESSION   AL049946
VERSION     AL049946.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Wambutt,R., Heubner,D., Mewes,H.W., Gassenhuber,J. and Wiemann,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-1999) MIPS, Am Klopferspitz 18a, D-82152
            Martinsried, GERMANY
COMMENT     Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
            Research Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
            sequenced by AGOWA (Berlin/Germany) within the cDNA sequencing
            consortium of the German Genome Project.
            This clone (DKFZp564I1922) is available at the RZPD in Berlin.
            Please contact the RZPD: Ressourcenzentrum, Heubnerweg 6, 14059
            Berlin-Charlottenburg, GERMANY; Email: clone@rzpd.de Further
            information about the clone and the sequencing project is available
            at http://www.mips.biochem.mpg.de/proj/cDNA/
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="DKFZp564I1922"
                     /tissue_type="brain"
                     /clone_lib="564 (synonym: hfbr2). Vector pAMP1; host
                     Xl-2blue; sites NotI + SalI"
                     /dev_stage="fetal"
     gene            <1..2353
                     /gene="DKFZp564I1922"
     CDS             <1..1757
                     /gene="DKFZp564I1922"
                     /note="similarity to perlecan"
                     /codon_start=3
                     /product="hypothetical protein"
                     /protein_id="CAB43220.1"
                     /db_xref="GOA:Q9NR99"
                     /db_xref="HGNC:HGNC:7539"
                     /db_xref="HSSP:1OZN"
                     /db_xref="InterPro:IPR000372"
                     /db_xref="InterPro:IPR000483"
                     /db_xref="InterPro:IPR003591"
                     /db_xref="InterPro:IPR003598"
                     /db_xref="InterPro:IPR003599"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR013098"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="UniProtKB/Swiss-Prot:Q9NR99"
                     /translation="VEHKEENDHKVFYGGDLKVDCVATGLPNPEISWSLPDGSLVNSF
                     MQSDDSGGRTKRYVVFNNGTLYFNEVGMREEGDYTCFAENQVGKDEMRVRVKVVTAPA
                     TIRNKTCLAVQVPYGDVVTVACEAKGEPMPKVTWLSPTNKVIPTSSEKYQIYQDGTLL
                     IQKAQRSDSGNYTCLVRNSAGEDRKTVWIHVNVQPPKINGNPNPITTVREIAAGGSRK
                     LIDCKAEGIPTPRVLWAFPEGVVLPAPYYGNRITVHGNGSLDIRSLRKSDSVQLVCMA
                     RNEGGEARLILQLTVLEPMEKPIFHDPISEKITAMAGHTISLNCSAAGTPTPSLVWVL
                     PNGTDLQSGQQLQRFYHKADGMLHISGLSSVDAGAYRCVARNAAGHTERLVSLKVGLK
                     PEASKQYHNLVSIINGETLKLPCTPPGAGQGRFSWTLPNGMHLEGPQTLGRVSLLDNG
                     TLTVREASVFDRGTYVCRMETEYGPSVTSIPVIVIAYPPRITSEPTPVIYTRPGNTVK
                     LNCMAMGIPKADITWELPDKSHLKAGVQARLYGNRFLHPQGSLTIQHATQRDAGFYKC
                     MAKNILGSDSKTTYIHVF"
     polyA_site      2333
                     /gene="DKFZp564I1922"
ORIGIN      
        1 gggttgagca caaggaggag aacgaccaca aagtcttcta cgggggtgac ctgaaagtgg
       61 actgtgtggc caccgggctt cccaatcccg agatctcctg gagcctccca gacgggagtc
      121 tggtgaactc cttcatgcag tcggatgaca gcggtggacg caccaagcgc tatgtcgtct
      181 tcaacaatgg gacactctac tttaacgaag tggggatgag ggaggaagga gactacacct
      241 gctttgctga aaatcaggtc gggaaggacg agatgagagt cagagtcaag gtggtgacag
      301 cgcccgccac catccggaac aagacttgct tggcggttca ggtgccctat ggagacgtgg
      361 tcactgtagc ctgtgaggcc aaaggagaac ccatgcccaa ggtgacttgg ttgtccccaa
      421 ccaacaaggt gatccccacc tcctctgaga agtatcagat ataccaagat ggcactctcc
      481 ttattcagaa agcccagcgt tctgacagcg gcaactacac ctgcttggtc aggaacagcg
      541 cgggagagga taggaagacg gtgtggattc acgtcaacgt ccagccaccc aagatcaacg
      601 gtaaccccaa ccccatcacc actgtgcggg agatagcagc cgggggcagt cggaaactga
      661 ttgactgcaa agctgaaggc atccccaccc cgagggtgtt atgggctttt cccgagggtg
      721 tggttctgcc agctccatac tatggaaacc ggatcactgt ccatggcaac ggttccctgg
      781 acatcaggag tttgaggaag agcgactccg tccagctggt atgcatggca cgcaacgagg
      841 gaggggaggc caggttgatc ctgcagctca ctgtcctgga gcccatggag aaacccatct
      901 tccacgaccc gatcagcgag aagatcacgg ccatggcggg ccacaccatc agcctcaact
      961 gctctgccgc ggggaccccg acacccagcc tggtgtgggt ccttcccaat ggcaccgatc
     1021 tgcagagtgg acagcagctg cagcgcttct accacaaggc tgacggcatg ctacacatta
     1081 gcggtctctc ctcggtggac gccggggcct accgctgcgt ggcccgcaat gccgctggcc
     1141 acacggagag gctggtctcc ctgaaggtgg gactgaagcc agaagcaagc aagcagtatc
     1201 ataacctggt cagcatcatc aatggtgaga ccctgaagct cccctgcacc cctcccgggg
     1261 ctgggcaggg acgtttctcc tggacgctcc ccaatggcat gcatctggag ggcccccaaa
     1321 ccctgggacg cgtttctctt ctggacaatg gcaccctcac ggttcgtgag gcctcggtgt
     1381 ttgacagggg tacctatgta tgcaggatgg agacggagta cggcccttcg gtcaccagca
     1441 tccccgtgat tgtgatcgcc tatcctcccc ggatcaccag cgagcccacc ccggtcatct
     1501 acacccggcc cgggaacacc gtgaaactga actgcatggc tatggggatt cccaaagctg
     1561 acatcacgtg ggagttaccg gataagtcgc atctgaaggc aggggttcag gctcgtctgt
     1621 atggaaacag atttcttcac ccccagggat cactgaccat ccagcatgcc acacagagag
     1681 atgccggctt ctacaagtgc atggcaaaaa acattctcgg cagtgactcc aaaacaactt
     1741 acatccacgt cttctgaaat gtggattcca gaatgattgc ttaggaactg acaacaaagc
     1801 ggggtttgta agggaagcca ggttggggaa taggagctct taaataatgt gtcacagtgc
     1861 atggtggcct ctggtgggtt tcaagttgag gttgatcttg atctacaatt gttgggaaaa
     1921 ggaagcaatg cagacacgag aaggagggct cagccttgct gagacacttt cttttgtgtt
     1981 tacatcatgc caggggcttc attcagggtg tctgtgctct gactgcaatt tttctttttt
     2041 tgcaaatgcc actcgactgc cttcataagc gtccatagga tatctgagga acattcatca
     2101 aaaataagcc atagacatga acaacacctc actaccccat tgaagacgca tcacctagtt
     2161 aacctgctgc agtttttaca tgatagactt tgttccagat tgacaagtca tctttcagtt
     2221 atttcctctg tcacttcaaa actccagctt gcccaataag gatttagaac cagagtgact
     2281 gatatatata tatattttaa ttcagagtta catacataca gctaccattt tatatgaaaa
     2341 aaaaaaaaaa aaa
//
<1..1757
/gene="DKFZp564I1922"
/note="similarity to perlecan"
/codon_start=3
/product="hypothetical protein"
/protein_id="CAB43220.1"
/db_xref="GOA:Q9NR99"
/db_xref="HGNC:HGNC:7539"
/db_xref="HSSP:1OZN"
/db_xref="InterPro:IPR000372"
/db_xref="InterPro:IPR000483"
/db_xref="InterPro:IPR003591"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013783"
/db_xref="UniProtKB/Swiss-Prot:Q9NR99"
/translation="VEHKEENDHKVFYGGDLKVDCVATGLPNPEISWSLPDGSLVNSF
MQSDDSGGRTKRYVVFNNGTLYFNEVGMREEGDYTCFAENQVGKDEMRVRVKVVTAPA
TIRNKTCLAVQVPYGDVVTVACEAKGEPMPKVTWLSPTNKVIPTSSEKYQIYQDGTLL
IQKAQRSDSGNYTCLVRNSAGEDRKTVWIHVNVQPPKINGNPNPITTVREIAAGGSRK
LIDCKAEGIPTPRVLWAFPEGVVLPAPYYGNRITVHGNGSLDIRSLRKSDSVQLVCMA
RNEGGEARLILQLTVLEPMEKPIFHDPISEKITAMAGHTISLNCSAAGTPTPSLVWVL
PNGTDLQSGQQLQRFYHKADGMLHISGLSSVDAGAYRCVARNAAGHTERLVSLKVGLK
PEASKQYHNLVSIINGETLKLPCTPPGAGQGRFSWTLPNGMHLEGPQTLGRVSLLDNG
TLTVREASVFDRGTYVCRMETEYGPSVTSIPVIVIAYPPRITSEPTPVIYTRPGNTVK
LNCMAMGIPKADITWELPDKSHLKAGVQARLYGNRFLHPQGSLTIQHATQRDAGFYKC
MAKNILGSDSKTTYIHVF"
Feature AL049946 : 1 segment
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Supplemental Content

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Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the MXRA5 gene (NM_015419.4).

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