LOCUS AK085686 4214 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days lactation, adult female mammary gland cDNA,
RIKEN full-length enriched library, clone:D730013E18 product:f-box
only protein 3, full insert sequence.
ACCESSION AK085686
VERSION AK085686.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 4214)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D730013E18.
FEATURES Location/Qualifiers
source 1..4214
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:D730013E18"
/db_xref="MGI:MGI:2422863"
/db_xref="taxon:10090"
/clone="D730013E18"
/sex="female"
/tissue_type="mammary gland"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="10 days lactation, adult"
misc_feature 1..4214
/note="f-box only protein 3 (MGD|MGI:1929084 GB|NM_020593,
evidence: BLASTN, 99%, match=1076);
putative"
ORIGIN
1 tggcagcggg ccgggcaaga tggctgccgt agaggccgag acggggctgc tgaccctgga
61 gtcgctgccc accgaccctc tgctgctcat cttatccttc gtggactaca gggacctaat
121 caattgttgc tatgttagtc gaagacttag ccagctttca actcatgatc cactgtggag
181 aagacattgc aaaaaatact ggctgatatc tgaggaagaa aaagccggga agagtcagtg
241 ctggagatcc ctcttcatag agacctactc agacgtgggg aggtacatcg accattacgc
301 cgccattaaa aaggcctggc gtgacctcaa gaagtacttg gagcccaggt gtcctcggat
361 ggttttatct ctgaaagagg gcgcacgtga ggaagacctg gatgctgtcg aagctcagat
421 cggttgcaag ctcccggatg attatcgctg ttcataccgg atccacaacg ggcaaaagtt
481 agtggtgccg gggttgctgg gaagtatggc actgtccaat cactaccgct ctgaagatct
541 actagatgtt gatactgctg caggaggatt tcagcagaga cagggactga aatactgtct
601 ccctttaacc ttttgcatac acaccggctt gagtcagtac atagctgtgg aggctgcaga
661 ggggcggaat aagaacgaag tgttctacca atgtccagac caaatggctc ggaatcctgc
721 tgctattgac atgtttatca taggtgctac ttttaccgac tggtttacat cctatgtcaa
781 caatgttgta tcaggtggtt tccccatcat cagagaccag attttcagat atattcatga
841 tccagaatgt gtggcaacaa ctggagatat tacagtttca gtgtccacat cgtttctgcc
901 agaactcagc tctgtgcatc cgccacacta tttcttcaca taccgaatca ggattgaaat
961 gtcaagggat gctcttcctg agaaggcctg tcagttggac agtcgctact ggaggataac
1021 aaacgctaaa ggggatgtgg aagaagtcca gggacctgga gtagtcggtg aatttccaat
1081 tattagccca ggaaatgggt cctgatgaat atgaagagat ggaggaggaa gctgaggagg
1141 aggaggagga agaaaatgat gactctgcag acatggatga atccgatgag tcagatgcgg
1201 atgagaatga gtcagatgag ggtgaagggg aggcgagacg gaggagggtc tttgatgttc
1261 ccattcgcag acgccgctgc tctcgtctgt tttagctgct gctgaaggaa gctctgggat
1321 gacactgttc tgttaaacag ttttgtcaat aatgtaaata attgtgctca gcatatagcc
1381 ggaagctcgc atgaaatgtt gttccagacc taggcgctac atgacactac attaggcgtt
1441 ggatcgcttt gcttgacttt gtgcttgtag gtagaggaac aaatgggaat tgtttgtttt
1501 ctcttccagg ggtcaatggg agagcagctc tctagctaaa gaacaggagt tcctttgttt
1561 aaaaatattt tctacttaaa aaccaaacag aggtgaaggg gaaattgttt tggatgagga
1621 ttttatatgt aacaaaaaca cccacccaag ggcagaaaga gactgcagga aggactgact
1681 gtgcaaagac ccctctcagt tgtttagaca ctaacaaaat ttatacttag cttaatccac
1741 ttcatggttg ttaacatttt atactcattg ggcaactaaa tggctaagtt caatagggat
1801 agtttgccct tacttagaca atctctcctt gcattagtct ttgtcacacc gacctgagtt
1861 gcaaattttt atcattactt ttaatttaaa gtcttcaaca taactttggg ctttaaaagt
1921 taaagttctt acgctatgac cgtcctcaca ttatttatag attcatcatt ttaaatgtag
1981 tttgtgaaag tacgtagggt gttgctaaag attcttcatg atgtctcatg tagtctaaat
2041 ttgtaaatat gcttcctgtc tggtcccttt atacatttgt ctaactttgt ggtaagtgat
2101 ctgaatctaa tgtcagggtt aggatatttt tgtgaaacat ggatattttt tttttgtaat
2161 tatataattg agagtttgga atgaaatcct tcaagtgtca aaaactccta ttttgaaaac
2221 atttttgtgt aagtgcctat ttcccataga tagtattgag cttttgttct taagctggaa
2281 gatggccatg gtgcttgctg gcttacagcc tgagtatagc tggtccattc agagctgact
2341 gctggctttg cttacacctg gagaaaatga gagcgccata ttcaggtcta agtgcctgct
2401 ctcgggtacc gtgagcaaac ttgccctttt atgaagacag atcagaatat tccaagtcat
2461 tttcctactt atttttcata aaagagtaca atcgcatggt gtttcaacag aaggcccgcg
2521 gcagcctcat cttctgtata ccacatctgt tgaatgtatc atttttctct tgtgcttgat
2581 taaatctcat gtgtttttgt ttgttatggc ccaaagcata cacagtctac tgctaaagtt
2641 gacagtaagt tgtcatcaag tgattgtcct agaaatgaaa ttaaaatgaa ggactttgaa
2701 ggcggaagca tcaccatggc tactgcttat taagtcagcc gcttcaccat agctgcaccc
2761 gcagaggaca agaacaggta ggacgtaagt tactggagca tctgcttcat tgaaggcagt
2821 acgactattt caagagaggt caatatcaga tctggagacc cttgtttgta atcacctgac
2881 gtgacaaaaa tgtgtcctca acagcatgat gaccactgcc aaagcagggt ttgcctacag
2941 cgttgaaaga gaagactaga cctgtcagag ttcctgagaa ctctgggtgg tctaaaatga
3001 ttgaagatca ttagagaatt tgaaaggaag tgataaacct gcaaacttgt gggtaaaggc
3061 cgctaacttt taaaagctag aaaagtgggt gtggagagcg gttactcgcc agagcaagcc
3121 ctcctctatt ccatctaggt ttgtataaaa tacattttgt ggtctttgca cagtgataaa
3181 agtacctggc aacacagtca cctaatgact catttcttaa actatattcc cactgttaag
3241 tgagaacatg gctgttatca gacttgagat actattcagg ctacccttgt taaaaaatag
3301 tcaacccttt taatttaggc tgccataata aaataccctt gattataata taaatagaaa
3361 atatagccag gccatggtgg cacatacctg taatcccaac ttgagaggca gattgaggca
3421 gaaggattat agtgagtttg aaattagccc aggctacaaa gtaaaatctt gtctttaaaa
3481 aaaaaaatgt agctatacaa accagtcgtt aataacaacc taatgtccta cattttcata
3541 aagatgcttt gttgattagt cagtataagg aaggagacag gatgtagaca acaaacatcc
3601 agaccctagt atcaaccccc tttaaaagga ctttcccagt aaagtagcaa ttaagaaacc
3661 atgacaaagc tggccccaca cttccttgtc attccttgta tcttttttgt agtacattga
3721 tggcccaact gtgcctgagc ccagcctaat gtttgttata gtacttcatg attgcttagc
3781 ctcccttcaa aatttgcctt ttggtatatt caacagactt ttattttctg ggacagagga
3841 caataacaga ccaaagaaat ccatccaagc tcagcctggt gggccaacaa attatcagga
3901 ttactaacag gaacatggat gattgacagc tgcaactgag gaacaacata gcagcctggg
3961 ggaggactca caagcattgg ggttcctggg aaactcaagg cagctgcatg tttgaagaat
4021 ctcttctagc aagtttgcac tgcttatata accactggga gaggtgtttg gtcataaatc
4081 tcagaatctt gaatcctctg aggagtttca tgagccttcc tactcccatc aggaggctgt
4141 ttctatgaat aggaattagc tgtacaataa acctccacat cacacaaagg tgtggttagt
4201 tgacaagcct ctgt
//