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Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730013E18 product:f-box only protein 3, full insert sequence

GenBank: AK085686.1

FASTA Graphics 

LOCUS       AK085686                4214 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 10 days lactation, adult female mammary gland cDNA,
            RIKEN full-length enriched library, clone:D730013E18 product:f-box
            only protein 3, full insert sequence.
ACCESSION   AK085686
VERSION     AK085686.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 4214)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=D730013E18.
FEATURES             Location/Qualifiers
     source          1..4214
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:D730013E18"
                     /db_xref="MGI:MGI:2422863"
                     /db_xref="taxon:10090"
                     /clone="D730013E18"
                     /sex="female"
                     /tissue_type="mammary gland"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="10 days lactation, adult"
     misc_feature    1..4214
                     /note="f-box only protein 3 (MGD|MGI:1929084 GB|NM_020593,
                     evidence: BLASTN, 99%, match=1076);
                     putative"
ORIGIN      
        1 tggcagcggg ccgggcaaga tggctgccgt agaggccgag acggggctgc tgaccctgga
       61 gtcgctgccc accgaccctc tgctgctcat cttatccttc gtggactaca gggacctaat
      121 caattgttgc tatgttagtc gaagacttag ccagctttca actcatgatc cactgtggag
      181 aagacattgc aaaaaatact ggctgatatc tgaggaagaa aaagccggga agagtcagtg
      241 ctggagatcc ctcttcatag agacctactc agacgtgggg aggtacatcg accattacgc
      301 cgccattaaa aaggcctggc gtgacctcaa gaagtacttg gagcccaggt gtcctcggat
      361 ggttttatct ctgaaagagg gcgcacgtga ggaagacctg gatgctgtcg aagctcagat
      421 cggttgcaag ctcccggatg attatcgctg ttcataccgg atccacaacg ggcaaaagtt
      481 agtggtgccg gggttgctgg gaagtatggc actgtccaat cactaccgct ctgaagatct
      541 actagatgtt gatactgctg caggaggatt tcagcagaga cagggactga aatactgtct
      601 ccctttaacc ttttgcatac acaccggctt gagtcagtac atagctgtgg aggctgcaga
      661 ggggcggaat aagaacgaag tgttctacca atgtccagac caaatggctc ggaatcctgc
      721 tgctattgac atgtttatca taggtgctac ttttaccgac tggtttacat cctatgtcaa
      781 caatgttgta tcaggtggtt tccccatcat cagagaccag attttcagat atattcatga
      841 tccagaatgt gtggcaacaa ctggagatat tacagtttca gtgtccacat cgtttctgcc
      901 agaactcagc tctgtgcatc cgccacacta tttcttcaca taccgaatca ggattgaaat
      961 gtcaagggat gctcttcctg agaaggcctg tcagttggac agtcgctact ggaggataac
     1021 aaacgctaaa ggggatgtgg aagaagtcca gggacctgga gtagtcggtg aatttccaat
     1081 tattagccca ggaaatgggt cctgatgaat atgaagagat ggaggaggaa gctgaggagg
     1141 aggaggagga agaaaatgat gactctgcag acatggatga atccgatgag tcagatgcgg
     1201 atgagaatga gtcagatgag ggtgaagggg aggcgagacg gaggagggtc tttgatgttc
     1261 ccattcgcag acgccgctgc tctcgtctgt tttagctgct gctgaaggaa gctctgggat
     1321 gacactgttc tgttaaacag ttttgtcaat aatgtaaata attgtgctca gcatatagcc
     1381 ggaagctcgc atgaaatgtt gttccagacc taggcgctac atgacactac attaggcgtt
     1441 ggatcgcttt gcttgacttt gtgcttgtag gtagaggaac aaatgggaat tgtttgtttt
     1501 ctcttccagg ggtcaatggg agagcagctc tctagctaaa gaacaggagt tcctttgttt
     1561 aaaaatattt tctacttaaa aaccaaacag aggtgaaggg gaaattgttt tggatgagga
     1621 ttttatatgt aacaaaaaca cccacccaag ggcagaaaga gactgcagga aggactgact
     1681 gtgcaaagac ccctctcagt tgtttagaca ctaacaaaat ttatacttag cttaatccac
     1741 ttcatggttg ttaacatttt atactcattg ggcaactaaa tggctaagtt caatagggat
     1801 agtttgccct tacttagaca atctctcctt gcattagtct ttgtcacacc gacctgagtt
     1861 gcaaattttt atcattactt ttaatttaaa gtcttcaaca taactttggg ctttaaaagt
     1921 taaagttctt acgctatgac cgtcctcaca ttatttatag attcatcatt ttaaatgtag
     1981 tttgtgaaag tacgtagggt gttgctaaag attcttcatg atgtctcatg tagtctaaat
     2041 ttgtaaatat gcttcctgtc tggtcccttt atacatttgt ctaactttgt ggtaagtgat
     2101 ctgaatctaa tgtcagggtt aggatatttt tgtgaaacat ggatattttt tttttgtaat
     2161 tatataattg agagtttgga atgaaatcct tcaagtgtca aaaactccta ttttgaaaac
     2221 atttttgtgt aagtgcctat ttcccataga tagtattgag cttttgttct taagctggaa
     2281 gatggccatg gtgcttgctg gcttacagcc tgagtatagc tggtccattc agagctgact
     2341 gctggctttg cttacacctg gagaaaatga gagcgccata ttcaggtcta agtgcctgct
     2401 ctcgggtacc gtgagcaaac ttgccctttt atgaagacag atcagaatat tccaagtcat
     2461 tttcctactt atttttcata aaagagtaca atcgcatggt gtttcaacag aaggcccgcg
     2521 gcagcctcat cttctgtata ccacatctgt tgaatgtatc atttttctct tgtgcttgat
     2581 taaatctcat gtgtttttgt ttgttatggc ccaaagcata cacagtctac tgctaaagtt
     2641 gacagtaagt tgtcatcaag tgattgtcct agaaatgaaa ttaaaatgaa ggactttgaa
     2701 ggcggaagca tcaccatggc tactgcttat taagtcagcc gcttcaccat agctgcaccc
     2761 gcagaggaca agaacaggta ggacgtaagt tactggagca tctgcttcat tgaaggcagt
     2821 acgactattt caagagaggt caatatcaga tctggagacc cttgtttgta atcacctgac
     2881 gtgacaaaaa tgtgtcctca acagcatgat gaccactgcc aaagcagggt ttgcctacag
     2941 cgttgaaaga gaagactaga cctgtcagag ttcctgagaa ctctgggtgg tctaaaatga
     3001 ttgaagatca ttagagaatt tgaaaggaag tgataaacct gcaaacttgt gggtaaaggc
     3061 cgctaacttt taaaagctag aaaagtgggt gtggagagcg gttactcgcc agagcaagcc
     3121 ctcctctatt ccatctaggt ttgtataaaa tacattttgt ggtctttgca cagtgataaa
     3181 agtacctggc aacacagtca cctaatgact catttcttaa actatattcc cactgttaag
     3241 tgagaacatg gctgttatca gacttgagat actattcagg ctacccttgt taaaaaatag
     3301 tcaacccttt taatttaggc tgccataata aaataccctt gattataata taaatagaaa
     3361 atatagccag gccatggtgg cacatacctg taatcccaac ttgagaggca gattgaggca
     3421 gaaggattat agtgagtttg aaattagccc aggctacaaa gtaaaatctt gtctttaaaa
     3481 aaaaaaatgt agctatacaa accagtcgtt aataacaacc taatgtccta cattttcata
     3541 aagatgcttt gttgattagt cagtataagg aaggagacag gatgtagaca acaaacatcc
     3601 agaccctagt atcaaccccc tttaaaagga ctttcccagt aaagtagcaa ttaagaaacc
     3661 atgacaaagc tggccccaca cttccttgtc attccttgta tcttttttgt agtacattga
     3721 tggcccaact gtgcctgagc ccagcctaat gtttgttata gtacttcatg attgcttagc
     3781 ctcccttcaa aatttgcctt ttggtatatt caacagactt ttattttctg ggacagagga
     3841 caataacaga ccaaagaaat ccatccaagc tcagcctggt gggccaacaa attatcagga
     3901 ttactaacag gaacatggat gattgacagc tgcaactgag gaacaacata gcagcctggg
     3961 ggaggactca caagcattgg ggttcctggg aaactcaagg cagctgcatg tttgaagaat
     4021 ctcttctagc aagtttgcac tgcttatata accactggga gaggtgtttg gtcataaatc
     4081 tcagaatctt gaatcctctg aggagtttca tgagccttcc tactcccatc aggaggctgt
     4141 ttctatgaat aggaattagc tgtacaataa acctccacat cacacaaagg tgtggttagt
     4201 tgacaagcct ctgt
//
1..4214
/note="f-box only protein 3 (MGD|MGI:1929084 GB|NM_020593,
evidence: BLASTN, 99%, match=1076);
putative"
Feature AK085686 : 1 segment
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