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Sample GSM999 Query DataSets for GSM999
Status Public on Feb 12, 2002
Title YP sucrose vs reference pool
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name sucrose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n115
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 16 9 10 18 11 15 7 8 12 20 .581 0 .263 .772 45 52 .909 .833 1.1 1.2 .762 1119 177 57 72 93 108 .263
2 22 10 38 57 48 22 9 10 54 64 .915 0 .507 .87 62 61 .792 .704 1.263 1.421 1.136 896 177 57 72 110 125 .507
3 13 10 4 13 5 14 8 9 6 15 .662 0 .585 .933 32 37 .8 .667 1.25 1.5 .58 896 177 57 72 128 143 .585
4 10 9 6 15 7 9 8 9 8 17 .592 0 .415 1.143 48 47 .857 .75 1.167 1.333 .615 906 177 57 72 145 160 .415
5 10 8 42 47 40 10 7 8 45 53 .738 0 .1 1 87 90 1.05 .933 .952 1.071 .614 919 177 57 72 163 178 .1
6 13 8 8 17 9 17 8 9 10 19 .561 0 .322 1 50 53 .889 .8 1.125 1.25 .493 928 177 57 72 180 195 .322
7 14 8 8 20 8 9 9 .044 0 .8 23 19 .037 928 177 57 72 198 213
8 13 8 7 16 9 10 8 .019 0 .857 22 13 .015 928 177 57 72 215 230
9 10 8 7 13 9 10 8 .039 0 .75 22 16 .033 928 177 57 72 233 248
10 16 7 7 24 8 9 8 -.104 0 .8 23 15 -.091 896 177 58 73 250 265
11 18 7 7 28 8 9 8 .069 0 1 24 19 .055 896 177 58 73 268 283
12 13 8 1 7 19 8 9 8 -.01 0 1 28 16 -.008 906 177 58 73 285 300
13 14 8 1 7 32 8 9 8 -.035 0 1 28 16 -.031 919 177 58 73 303 318
14 12 7 1 7 27 8 9 8 -.114 0 .6 35 12 -.085 928 177 58 73 320 335
15 13 8 1 8 21 8 9 9 -.002 0 1 31 24 -.001 928 177 58 73 338 353
16 14 8 9 1 21 8 9 1 10 -.008 0 .75 26 25 -.007 928 177 58 73 355 370
17 10 8 8 12 8 9 9 -.037 0 .9 25 23 -.032 928 177 58 73 373 388
18 11 9 8 13 8 9 9 -.023 0 .615 28 18 -.016 896 177 59 74 390 405
19 11 9 8 13 9 10 9 -.022 0 .75 18 18 -.018 896 177 59 74 408 423
20 12 9 1 8 16 9 10 9 .07 0 .833 25 14 .054 906 177 59 74 425 440

Total number of rows: 9216

Table truncated, full table size 971 Kbytes.




Supplementary data files not provided
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