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Sample GSM99584

Query DataSets for GSM99584

Status

Public on Mar 08, 2006

Title

brain, Left Temporal Lobe: Extract49_le1

Sample type

RNA

Source name

brain, Left Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Left Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 2098
age: 65
gender: MALE
grade: 4
living: ALIVE
survival time: 203
survival cluster: SC2
hc_74_samples: HC2A
hc_85_samples: HC2A
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

[email protected]

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326684

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1378.9819	P	0.002867
AFFX-BioB-M_at	2959.8904	P	0.000446
AFFX-BioB-3_at	1052.4099	P	0.004998
AFFX-BioC-5_at	4794.032	P	0.000127
AFFX-BioC-3_at	3838.7642	P	0.000081
AFFX-BioDn-5_at	4661.9746	P	0.000060
AFFX-BioDn-3_at	28252.682	P	0.000081
AFFX-CreX-5_at	45075.004	P	0.000044
AFFX-CreX-3_at	61224.234	P	0.000044
AFFX-DapX-5_at	155.27277	A	0.239063
AFFX-DapX-M_at	157.6761	A	0.327079
AFFX-DapX-3_at	17.899017	A	0.986189
AFFX-LysX-5_at	73.669136	A	0.617401
AFFX-LysX-M_at	29.922287	A	0.852061
AFFX-LysX-3_at	39.30085	A	0.699394
AFFX-PheX-5_at	21.204151	A	0.945787
AFFX-PheX-M_at	9.267707	A	0.997725
AFFX-PheX-3_at	259.36914	A	0.659339
AFFX-ThrX-5_at	101.48704	A	0.470241
AFFX-ThrX-M_at	182.02235	A	0.313723

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99584.CEL.gz	3.5 Mb	(ftp)(http)	CEL