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Status
Public on Mar 08, 2006
Title
brain, left frontal temporal lobe: Extract2_le2
Sample type
RNA
Source name
brain, left frontal temporal lobe
Organism
Homo sapiens Characteristics
tissue: brain, left frontal temporal lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
6529.51
P
0.004017
AFFX-BioB-M_at
13271.347
P
0.000390
AFFX-BioB-3_at
4314.2935
P
0.003212
AFFX-BioC-5_at
15311.013
P
0.000070
AFFX-BioC-3_at
13375.938
P
0.000070
AFFX-BioDn-5_at
9582.619
P
0.000070
AFFX-BioDn-3_at
98655.516
P
0.000070
AFFX-CreX-5_at
134364.52
P
0.000044
AFFX-CreX-3_at
211528.7
P
0.000044
AFFX-DapX-5_at
166.00833
A
0.470241
AFFX-DapX-M_at
313.00958
A
0.529760
AFFX-DapX-3_at
48.439663
A
0.992380
AFFX-LysX-5_at
975.98395
P
0.023929
AFFX-LysX-M_at
56.068466
A
0.904333
AFFX-LysX-3_at
318.93732
A
0.313723
AFFX-PheX-5_at
127.43555
A
0.659339
AFFX-PheX-M_at
285.85434
A
0.760937
AFFX-PheX-3_at
493.0509
A
0.559354
AFFX-ThrX-5_at
240.45447
A
0.814869
AFFX-ThrX-M_at
164.37914
A
0.783476
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99493.CEL.gz
3.3 Mb
(ftp) (http) CEL
