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Sample GSM985 Query DataSets for GSM985
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time6.5hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.14
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n84
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 851 848 501 904 600 300 304 310 612 922 .969 0 .289 1.38 24 36 .835 .819 1.198 1.222 1.072 1099 87 25 36 35 46 .289
2 860 856 348 778 474 302 304 310 484 794 .974 0 .476 1.254 25 37 .734 .719 1.362 1.391 1.283 874 87 25 36 45 56 .476
3 875 872 328 653 349 303 304 310 356 666 .964 0 .118 1 24 31 .94 .921 1.064 1.085 1.041 755 87 25 36 55 66 .118
4 882 880 134 464 160 306 304 310 163 473 .894 0 .283 1.077 11 22 .838 .822 1.194 1.216 1.083 755 87 25 36 65 76 .283
5 886 888 769 1540 1236 305 304 310 1261 1571 .976 0 .714 1.588 25 48 .622 .61 1.607 1.64 1.478 755 87 25 36 75 86 .714
6 899 896 91 446 142 305 304 310 145 455 .944 0 .672 1.155 8 14 .641 .628 1.56 1.593 1.059 755 87 25 36 85 96 .672
7 901 896 228 517 213 305 304 310 218 528 .934 0 -.065 .906 21 32 1.07 1.046 .934 .956 .793 755 87 25 36 95 106 -.065
8 909 904 154 443 139 304 304 310 142 452 .732 0 -.117 .893 6 42 1.108 1.085 .903 .922 .524 755 87 25 36 105 116 -.117
9 921 920 95 411 107 308 304 310 109 419 .877 0 .198 .75 6 18 .888 .872 1.126 1.147 .914 755 87 25 36 115 126 .198
10 926 928 108 441 129 313 312 318 132 450 .94 0 .29 1 10 19 .837 .818 1.194 1.222 .931 755 87 25 36 125 136 .29
11 935 936 118 454 142 315 312 318 145 463 .904 0 .297 .903 11 22 .831 .814 1.203 1.229 .897 755 87 25 36 135 146 .297
12 944 944 146 540 228 320 312 318 233 551 .93 0 .674 1.333 14 31 .64 .627 1.562 1.596 1.147 755 87 25 36 145 156 .674
13 946 944 53 371 51 321 320 327 52 379 .841 0 -.027 .633 3 8 1.039 1.019 .962 .981 .889 757 87 25 36 155 166 -.027
14 970 952 105 466 146 346 320 327 149 476 .94 0 .505 .929 10 16 .719 .705 1.39 1.419 .93 756 87 25 36 165 176 .505
15 985 960 262 685 357 362 328 335 364 699 .971 0 .474 1.419 12 26 .734 .72 1.363 1.389 1.114 755 87 25 36 175 186 .474
16 981 960 195 619 283 363 336 343 289 632 .977 0 .568 1.278 14 21 .689 .675 1.451 1.482 1.272 754 87 25 36 185 196 .568
17 989 960 271 749 413 367 336 343 421 764 .952 0 .636 1.398 19 27 .656 .644 1.524 1.554 1.363 751 87 25 36 195 206 .636
18 983 968 52 377 41 345 336 343 42 385 .519 0 -.308 .8 1 9 1.268 1.238 .788 .808 .275 751 87 25 36 205 216 -.308
19 980 968 23078 823 487 335 336 343 497 840 0 0 -5.537 .019 80 50 47.388 46.435 .021 .022 0 751 87 25 36 215 226 -5.537
20 985 976 1391 2982 2646 335 336 343 2700 3043 .351 0 .957 2.53 56 75 .526 .515 1.902 1.941 .544 751 87 25 36 225 236 .957

Total number of rows: 7680

Table truncated, full table size 939 Kbytes.




Supplementary data files not provided
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