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Sample GSM976 Query DataSets for GSM976
Status Public on Feb 12, 2002
Title Elutriation2:Sample2:Time4.0hrs
Sample type RNA
 
Channel 1
Source name Ref Pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 2.2.9
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Elutriation
Lot batch = y744n79
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE24 Elutriation time course

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 894 888 2207 3205 2727 486 478 431 2456 2887 .94 0 .154 1.269 39 56 .809 .899 1.236 1.113 1.124 1227 69 40 50 31 41 .154
2 914 904 2516 3775 3297 480 478 431 2970 3401 .939 0 .239 1.333 55 71 .763 .847 1.31 1.18 1.163 1082 69 39 49 41 51 .239
3 949 928 1118 2079 1611 485 468 422 1451 1873 .899 0 .376 1.47 33 52 .694 .771 1.441 1.298 1.15 987 69 39 49 51 61 .376
4 988 952 123 685 217 523 468 422 195 617 .872 0 .665 1.545 10 26 .567 .631 1.764 1.585 1.119 982 69 39 49 61 71 .665
5 1005 968 2121 4343 3875 520 468 422 3491 3913 .881 0 .719 2.029 52 68 .547 .608 1.827 1.646 1.511 973 69 39 49 71 81 .719
6 1016 976 114 614 146 520 468 422 131 553 .908 0 .201 .931 7 18 .781 .87 1.281 1.149 1.002 964 69 39 49 81 91 .201
7 1007 976 398 913 445 518 468 422 401 823 .914 0 .011 1.082 33 53 .894 .993 1.118 1.008 .832 955 69 39 49 91 101 .011
8 978 976 458 978 510 480 468 422 459 881 .866 0 .003 1.144 33 63 .898 .998 1.114 1.002 .812 950 69 39 49 101 111 .003
9 974 968 199 680 202 486 478 431 182 613 .902 0 -.129 .754 11 23 .985 1.093 1.015 .915 1.005 950 69 39 49 111 121 -.129
10 1023 968 92 535 57 590 478 431 51 482 .794 0 -.851 .717 5 8 1.614 1.804 .62 .554 .576 950 69 39 49 121 131 -.851
11 1023 968 164 748 270 596 478 431 243 674 .889 0 .567 1.219 13 20 .607 .675 1.646 1.482 1.165 950 69 39 49 131 141 .567
12 1024 960 602 1521 1043 590 478 431 939 1370 .943 0 .641 1.53 23 34 .577 .641 1.733 1.56 1.603 950 69 39 49 141 151 .641
13 1017 952 127 662 184 591 478 431 165 596 .953 0 .378 1.595 4 13 .69 .77 1.449 1.299 1.017 950 69 39 49 151 161 .378
14 999 944 145 675 188 552 487 439 169 608 .917 0 .221 1.12 7 18 .771 .858 1.297 1.166 1.116 950 69 39 49 161 171 .221
15 1024 936 822 1625 1138 599 487 439 1025 1464 .882 0 .318 1.392 28 39 .722 .802 1.384 1.247 1.136 950 69 39 49 171 181 .318
16 1007 920 1131 2061 1574 598 487 439 1418 1857 .89 0 .326 1.424 28 36 .719 .798 1.392 1.254 1.093 955 69 39 49 181 191 .326
17 1050 912 311 921 434 618 487 439 391 830 .945 0 .33 1.377 20 27 .717 .795 1.395 1.257 1.276 955 69 39 49 191 201 .33
18 1011 904 136 579 92 557 487 439 83 522 .865 0 -.712 .833 11 15 1.478 1.639 .676 .61 .714 964 69 39 49 201 211 -.712
19 974 896 34222 1119 641 503 478 431 577 1008 0 0 -5.89 .019 97 76 53.388 59.31 .019 .017 0 964 69 39 49 211 221 -5.89
20 971 896 1037 4089 3611 511 478 431 3253 3684 .703 0 1.649 3.532 55 89 .287 .319 3.482 3.137 2.181 968 69 39 49 221 231 1.649

Total number of rows: 7680

Table truncated, full table size 951 Kbytes.




Supplementary data files not provided
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