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Sample GSM97199 Query DataSets for GSM97199
Status Public on Feb 24, 2006
Title P18 non-deprived visual cortex replicate 4
Sample type RNA
 
Source name visual cortex
Organism Mus musculus
Characteristics Wild type, P18 mouse visual cortex ipsilateral to 4 day monocular enucleation
Extracted molecule total RNA
Extraction protocol 4 wild-type (C57Bl6) mice underwent monocular enucleation at P14 and were sacrificed 4 days later at P18. Visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL).
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type P18 mouse visual cortex ipsilateral to monocular enucleation
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Feb 17, 2006
Last update date Feb 17, 2006
Contact name Marta Majdan
E-mail(s) [email protected]
Phone 617-432-5069
Organization name Harvard Medical School
Department Neurobiology
Street address 220 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 01225
Country USA
 
Platform ID GPL81
Series (2)
GSE4263 P18 mouse non-deprived vs. deprived visual cortex
GSE4269 P18, P24, P46, P104, and P46DR (dark reared) non-deprived vs. deprived visual cortex

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 16.1 A 0.804734
AFFX-MurIL10_at 56.7 A 0.455413
AFFX-MurIL4_at 19.5 A 0.52976
AFFX-MurFAS_at 45.4 A 0.368438
AFFX-BioB-5_at 535.7 P 0.001593
AFFX-BioB-M_at 1347.3 P 0.000052
AFFX-BioB-3_at 610.1 P 0.000127
AFFX-BioC-5_at 1701.5 P 0.000147
AFFX-BioC-3_at 1317.1 P 0.000044
AFFX-BioDn-5_at 1827.5 P 0.000052
AFFX-BioDn-3_at 8404.4 P 0.00007
AFFX-CreX-5_at 19183.1 P 0.000044
AFFX-CreX-3_at 24293.6 P 0.000044
AFFX-BioB-5_st 90.7 A 0.095667
AFFX-BioB-M_st 111.9 A 0.455413
AFFX-BioB-3_st 50.1 A 0.686277
AFFX-BioC-5_st 24.2 A 0.760937
AFFX-BioC-3_st 21 A 0.58862
AFFX-BioDn-5_st 252.2 A 0.089478
AFFX-BioDn-3_st 311.6 P 0.033677

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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