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Sample GSM97198 Query DataSets for GSM97198
Status Public on Feb 24, 2006
Title P18 deprived visual cortex replicate 3
Sample type RNA
 
Source name visual cortex
Organism Mus musculus
Characteristics Wild type, P18 mouse visual cortex contralateral to 4 day monocular enucleation
Extracted molecule total RNA
Extraction protocol 4 wild-type (C57Bl6) mice underwent monocular enucleation at P14 and were sacrificed 4 days later at P18. Visual cortex was dissected from 1-mm thick coronal sections, and total RNA was extracted from the tissue lysate using Trizol (Gibco-BRL).
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type P18 mouse visual cortex contralateral to monocular enucleation
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Feb 17, 2006
Last update date Feb 17, 2006
Contact name Marta Majdan
E-mail(s) [email protected]
Phone 617-432-5069
Organization name Harvard Medical School
Department Neurobiology
Street address 220 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 01225
Country USA
 
Platform ID GPL81
Series (2)
GSE4263 P18 mouse non-deprived vs. deprived visual cortex
GSE4269 P18, P24, P46, P104, and P46DR (dark reared) non-deprived vs. deprived visual cortex

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 13.8 A 0.876428
AFFX-MurIL10_at 77.4 A 0.41138
AFFX-MurIL4_at 54.6 A 0.108979
AFFX-MurFAS_at 47.2 A 0.354453
AFFX-BioB-5_at 549.3 P 0.001796
AFFX-BioB-M_at 1792.4 P 0.00007
AFFX-BioB-3_at 704.6 P 0.000195
AFFX-BioC-5_at 2003.6 P 0.000225
AFFX-BioC-3_at 1801.8 P 0.000044
AFFX-BioDn-5_at 1899.1 P 0.000052
AFFX-BioDn-3_at 9276.8 P 0.00007
AFFX-CreX-5_at 21394.9 P 0.000044
AFFX-CreX-3_at 26123.4 P 0.000044
AFFX-BioB-5_st 98.6 A 0.250796
AFFX-BioB-M_st 81.9 A 0.544587
AFFX-BioB-3_st 36.1 A 0.794268
AFFX-BioC-5_st 25.5 A 0.897835
AFFX-BioC-3_st 39.5 A 0.58862
AFFX-BioDn-5_st 325 A 0.083592
AFFX-BioDn-3_st 509 P 0.012547

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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