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Sample GSM96900 Query DataSets for GSM96900
Status Public on Feb 17, 2006
Title Hereditary gingival fibromatosis(HGF) patient Gingiva replicate2
Sample type RNA
 
Source name HGF patient gingiva tissue
Organism Homo sapiens
Characteristics Hereditary gingival fibromatosis (HGF) is a benign disorder manifested by a slowly progressive enlargement of the oral gingival tissues, which results in the teeth being partially or totally engulfed by keratinized gingiva.Affected gingiva tissues were removed from HGF volunteers during surgical procedure.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen)
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description HGF gingiva tissue removed during surgical procedures and stored in liquid nitrogen immediately
Data processing Affymetrix Microarray Suite 5.0 was used to quantitate expression levels for targeted genes
 
Submission date Feb 16, 2006
Last update date Aug 28, 2018
Contact name Kong Xiangyin
E-mail(s) [email protected]
Phone +86-21-64678976
Fax +86-21-64678976
Organization name Institute of Health Sciences,SIBS,CAS/SJTU
Lab Molecular Genetics Lab
Street address South Chongqin Rd.225
City Shanghai
ZIP/Postal code 200025
Country China
 
Platform ID GPL570
Series (1)
GSE4250 Determination of expression level of gingiva expressed genes
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE detection p-value
ABS_CALL presence absence call from affymetrix
DETECTION P-VALUE affymetrix Signal,MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 525.7 P 0.000219
1053_at 56.2 P 0.000959
117_at 41.4 P 0.003067
121_at 90.2 P 0.002228
1255_g_at 7.8 A 0.458816
1294_at 43 P 0.007543
1316_at 31.6 P 0.035163
1320_at 3.4 A 0.715253
1405_i_at 33.1 P 0.000944
1431_at 10.8 P 0.035163
1438_at 84.4 P 0.000322
1487_at 105.5 P 0.021866
1494_f_at 5.7 A 0.621816
1598_g_at 174.1 P 0.002228
160020_at 43 P 0.035163
1729_at 83.4 P 0.001602
1773_at 75 P 0.00418
177_at 79.2 P 0.000673
179_at 58.2 M 0.05447
1861_at 84.3 P 0.00418

Total number of rows: 54613

Table truncated, full table size 1396 Kbytes.




Supplementary file Size Download File type/resource
GSM96900.CEL.gz 7.9 Mb (ftp)(http) CEL
GSM96900.EXP.gz 353 b (ftp)(http) EXP

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