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Sample GSM957745 Query DataSets for GSM957745
Status Public on Dec 06, 2012
Title Cell line VMM39, mutant status Ras, condition Treated with Diclofenac 1
Sample type RNA
 
Source name RNA from Cell line VMM39, mutant status Ras, condition Treated with Diclofenac
Organism Homo sapiens
Characteristics cell line: VMM39
mutation: Ras
treatment: Treated with Diclofenac
Growth protocol SLM2, VMM39, and DM331 cells were plated and incubated overnight before being treated, in duplicate, with inhibitors or vehicle control in phenol red-free RPMI Medium 1640 without fetal bovine serum for 8 hours at 37°C. Cells were placed on ice and rinsed with cold 1x PBS.
Extracted molecule total RNA
Extraction protocol Cells were collected and RNA was isolated using the Qiashredder (Qiagen, Valencia, CA) and RNeasy Mini Kit (Qiagen, Valencia, CA).
Label biotin
Label protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
 
Hybridization protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Scan protocol The gene array was performed using Illumina 3’IVT human HT-12 BeadChip arrays by Gene Analysis (Durham, NC).
Description Cell line VMM39, mutant status Ras, condition Treated with Diclofenac 1
Data processing Quantile normalized and log2-transformed
 
Submission date Jul 09, 2012
Last update date Dec 06, 2012
Contact name Stephen Turner
Organization name Signature Science, LLC
Street address 1670 Discovery Drive
City Charlottesville
State/province VA
ZIP/Postal code 22911
Country USA
 
Platform ID GPL6947
Series (1)
GSE39192 Synthetic lethal screening with small molecule inhibitors provides a pathway to rational combination therapies for melanoma

Data table header descriptions
ID_REF
VALUE Quantile normalized and log2-transformed hybridization intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1802380 7.539189713 0
ILMN_1893287 1.235761115 0.731225312
ILMN_1736104 1.129928383 0.856389999
ILMN_1792389 3.324670468 0.044795785
ILMN_1854015 3.941593779 0.011857707
ILMN_1904757 1.418591735 0.504611313
ILMN_1740305 3.673471409 0.021080369
ILMN_1665168 1.197053417 0.777338624
ILMN_2375156 1.487832853 0.303030312
ILMN_1705423 1.295652226 0.658761501
ILMN_1716072 1.596505546 0.216073781
ILMN_1697642 9.050111763 0
ILMN_1788184 2.184987491 0.152832672
ILMN_1681845 8.445556632 0
ILMN_1823296 2.582076724 0.10408432
ILMN_1889845 1.081168243 0.913043499
ILMN_1746923 2.241380084 0.144927531
ILMN_1690979 3.482836877 0.031620555
ILMN_1811114 2.033801034 0.169960469
ILMN_1660729 1.264210405 0.694334626

Total number of rows: 48803

Table truncated, full table size 1663 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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