|
| Status |
Public on Apr 01, 2015 |
| Title |
non-OSCC N30 Methylation |
| Sample type |
genomic |
| |
|
| Source name |
adjacent non-tumor epithelia
|
| Organism |
Homo sapiens |
| Characteristics |
gender: male
tissue: oral epithelia
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
OSCC and non-OSCC pair-wise samples were prepared after cutting into 5μm-thick sections on a microtome with a disposable blade.Genomic DNA was extracted and purified using Qiagen DNeasy Kit according to the manufacturer's instruction.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
non-OSCC
|
| Data processing |
GenomeStudio software v1.1
|
| |
|
| Submission date |
Jun 06, 2012 |
| Last update date |
Apr 01, 2015 |
| Contact name |
Chia Huei Lee |
| E-mail(s) |
[email protected]
|
| Organization name |
Taiwan National Health Research Institute
|
| Department |
National Institute of Cancer Research
|
| Street address |
35, Keyan Rd.
|
| City |
Zhunan Miaoli County |
| ZIP/Postal code |
114 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE38532 |
Methylation profiling of oral squamous cell carcinoma (OSCC) |
|
