GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM94309
Query DataSets for GSM94309
Status
Public on Feb 10, 2006
Title
H69
Sample type
RNA
Source name
human cancer cell line
Organism
Homo sapiens
Characteristics
small cell cancer cell line
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the cell lysate using TRIsol reagent (Invitrogen).mRNA was purified from total RNA with oligo-dT-magnetic beads (Toyobo)
Label
biotin
Label protocol
Approximately 1µg of mRNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
small cell cancer cell line
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Feb 02, 2006
Contact name
Akihiko Gemma
Organization name
Nippon Medical School
Street address
Bumkyo-ku
City
Tokyo
ZIP/Postal code
100-0013
Country
Japan
Platform ID
GPL96
Series (1)
GSE4127
Anticancer drug clustering in lung cancer based on gene expression profiles and sensitivity database
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
363.9
P
AFFX-BioB-M_at
640.3
P
AFFX-BioB-3_at
413.7
P
AFFX-BioC-5_at
1178.7
P
AFFX-BioC-3_at
813.5
P
AFFX-BioDn-5_at
849.3
P
AFFX-BioDn-3_at
5254.8
P
AFFX-CreX-5_at
9405.4
P
AFFX-CreX-3_at
14442.8
P
AFFX-DapX-5_at
13
A
AFFX-DapX-M_at
31.1
A
AFFX-DapX-3_at
3.5
A
AFFX-LysX-5_at
11.6
A
AFFX-LysX-M_at
9.6
A
AFFX-LysX-3_at
25.3
A
AFFX-PheX-5_at
2.8
A
AFFX-PheX-M_at
3.2
A
AFFX-PheX-3_at
36.4
A
AFFX-ThrX-5_at
4.5
A
AFFX-ThrX-M_at
9.9
A
Total number of rows:
22283
Table truncated, full table size
398 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM94309.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
