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Sample GSM94045 Query DataSets for GSM94045
Status Public on Feb 27, 2006
Title Smoker diagnosed with cancer Sample 188
Sample type RNA
 
Source name Bronchial Epithelium
Organism Homo sapiens
Characteristics Sample from smoker diagnosed with cancer
sample_id: 188
age: 73
gender: M
race: OTHER
cancer_status: Cancer
smoking_status: quit for 10 years or greater
packyears: 50
bronch_status: non-diagnostic
presence_of_hemopytsis: 1
presence_of_lymphadenopathy: 0
mass_size_greater_than_3cm: 0
biomarker_score: -15.97549696
subjective_assessment: High
Extracted molecule total RNA
Extraction protocol RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol
Label Biotin
Label protocol Affymetrix Suggested Protocol
 
Hybridization protocol Affymetrix Suggested Protocol
Scan protocol Affymetrix Suggested Protocol
Description RNA isolated from bronchial epithelial cells obtained during time of clinical bronchoscopy of cigarette smoking patients with suspect lung cancer
Data processing RMA (Robust Multichip Average) generated expression value
 
Submission date Jan 29, 2006
Last update date Nov 16, 2009
Contact name Avrum Spira
E-mail(s) [email protected]
Phone 617-638-4860
Fax 617-536-8093
URL http://www.pulmonomics.com
Organization name Boston University Medical Center
Department Pulmonary and Critical Care Medicine
Lab Pulmonomics Lab
Street address 715 Albany Street, R304
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
 
Platform ID GPL96
Series (1)
GSE4115 Airway Epithelial Gene Expression Diagnostic for the Evaluation of Smokers with Suspect Lung Cancer

Data table header descriptions
ID_REF Affymetrix Probeset Identifier
VALUE RMA Expression Value, a measure of the abundance of a transcript

Data table
ID_REF VALUE
1007_s_at 10.363817
1053_at 4.277097
117_at 5.357187
121_at 8.015397
1255_g_at 3.787262
1294_at 6.975058
1316_at 4.927865
1320_at 4.130553
1405_i_at 6.055316
1431_at 3.261558
1438_at 6.412797
1487_at 7.267551
1494_f_at 6.718706
1598_g_at 8.459505
160020_at 7.142032
1729_at 7.559476
1773_at 4.713994
177_at 4.833301
179_at 8.722891
1861_at 6.736925

Total number of rows: 22215

Table truncated, full table size 432 Kbytes.




Supplementary data files not provided

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