|
| Status |
Public on Apr 01, 2006 |
| Title |
Mouse sarcoma replicate 1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
mouse sarcoma
|
| Organism |
Mus musculus |
| Characteristics |
mouse sarcoma that developed spontaneously on an intact mouse. This was used as a control for contamination of the human xenografts with mouse stromal cells.
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
common reference of 13 cell lines
|
| Organism |
Homo sapiens |
| Characteristics |
13 cell lines that originated from prostate cancer (Du145 and LNCaP), breast (MCF7 and ZR75.1), bone (MG63), colon (HT29), endothelium (Ea-hy926), ovary (A2780), skin (SK-MEL-28), B-cell leukemia (Raji), T-cell lymphoblastoma (Jurkat) and fibroblasts (N92-19N and N92-19T).
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
mouse sarcoma that developed spontaneously on an intact mouse. This was used as a control for contamination of the human xenografts with mouse stromal cells.
|
| Data processing |
Normalization was performed using R-routines (Lowess method; http://cmfdb.nki.nl/). All spots with an R-value below 3 or with an average intensity less than 0.4 of the median spot intensity per subarray were considered to be insufficiently reliable and were excluded from the data analysis.
|
| |
|
| Submission date |
Jan 13, 2006 |
| Last update date |
Jan 24, 2006 |
| Contact name |
Peter Hendriksen |
| E-mail(s) |
[email protected]
|
| Organization name |
Wageningen University & Research
|
| Department |
RIKILT
|
| Street address |
Akkermaalsbos 2
|
| City |
Wageningen |
| ZIP/Postal code |
6708 WB |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL3349 |
| Series (1) |
| GSE4084 |
Human prostate cancer xenografts on intact mice or after castration. |
|
