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Sample GSM92581 Query DataSets for GSM92581
Status Public on Apr 01, 2006
Title PC xenograft PC339 replicate_2
Sample type RNA
 
Channel 1
Source name xenograft
Organism Homo sapiens
Characteristics Androgen-independent xenograft, without expression of a functional androgen receptor, on intact mouse.
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name common reference of 13 cell lines
Organism Homo sapiens
Characteristics 13 cell lines that originated from prostate cancer (Du145 and LNCaP), breast (MCF7 and ZR75.1), bone (MG63), colon (HT29), endothelium (Ea-hy926), ovary (A2780), skin (SK-MEL-28), B-cell leukemia (Raji), T-cell lymphoblastoma (Jurkat) and fibroblasts (N92-19N and N92-19T).
Extracted molecule total RNA
Label Cy5
 
 
Description The prostate cancer xenografts have been described by van Weerden and Romijn (Prostate 2000; 43:263-271). The xenografts were serially passaged subcutaneously in both shoulders of male Swiss nude mice.
Data processing Normalization was performed using R-routines (Lowess method; http://cmfdb.nki.nl/). All spots with an R-value below 3 or with an average intensity less than 0.4 of the median spot intensity per subarray were considered to be insufficiently reliable and were excluded from the data analysis.
 
Submission date Jan 13, 2006
Last update date Jan 23, 2006
Contact name Peter Hendriksen
E-mail(s) [email protected]
Organization name Wageningen University & Research
Department RIKILT
Street address Akkermaalsbos 2
City Wageningen
ZIP/Postal code 6708 WB
Country Netherlands
 
Platform ID GPL3349
Series (1)
GSE4084 Human prostate cancer xenografts on intact mice or after castration.

Data table header descriptions
ID_REF spot number
VALUE normalized log2 ratio of xenograft / common reference
CH1_SIG_MEAN Mean signal intensity of the spot of channel 1
CH1_BKD_MEAN Mean intensity of the background of channel 1
CH2_SIG_MEAN Mean signal intensity of the spot of channel 2
CH2_BKD_MEAN Mean intensity of the background of channel 2

Data table
ID_REF VALUE CH1_SIG_MEAN CH1_BKD_MEAN CH2_SIG_MEAN CH2_BKD_MEAN
1 -0.15 5524.089172 2271.759717 6168.925 2303.135714
2 -0.13 2601.961165 2115.43131 2955.608247 2243.297806
3 0.61 5727.587097 2113.372197 4930.536232 2304.116667
4 0.12 3115.523077 1990.385185 3672.844828 2279.042254
5 1883.834862 1890.112281 2129.394495 2205.195876
6 1778.93578 1820.371747 2094.183486 2160.052045
7 1757.931034 1758.910995 2148.662069 2135.705263
8 1733.082569 1728.661355 2254.513761 2114.533865
9 1694.768519 1692.972678 2130.288372 2135.825137
10 1638.11399 1645.037838 2136.341969 2094.4
11 1626.760417 1624.966543 2150.704663 2138.977612
12 1601.027523 1584.855524 2157.009174 2126.946176
13 1579.467742 1557.888 2160.983871 2124.272
14 1576.201835 1547.450151 2128.825688 2124.320242
15 1551.027523 1524.620209 2144.642202 2128.912892
16 1540.72093 1525.888476 2121.511628 2099.234201
17 1534.841379 1517.749153 2171.393103 2118.433898
18 1524.66129 1511.929712 2140.177419 2103.463259
19 1523.62037 1509.382353 2113.305556 2114.764706
20 1494.013793 1495.764706 2166.537931 2097.850394

Total number of rows: 19185

Table truncated, full table size 1043 Kbytes.




Supplementary data files not provided
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