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Sample GSM92539 Query DataSets for GSM92539
Status Public on Apr 01, 2006
Title PC xenograft PC295 replicate_2
Sample type RNA
 
Channel 1
Source name xenograft
Organism Homo sapiens
Characteristics Androgen-dependent xenograft, androgen receptor expressing, on intact mouse.
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name common reference of 13 cell lines
Organism Homo sapiens
Characteristics 13 cell lines that originated from prostate cancer (Du145 and LNCaP), breast (MCF7 and ZR75.1), bone (MG63), colon (HT29), endothelium (Ea-hy926), ovary (A2780), skin (SK-MEL-28), B-cell leukemia (Raji), T-cell lymphoblastoma (Jurkat) and fibroblasts (N92-19N and N92-19T).
Extracted molecule total RNA
Label Cy5
 
 
Description The prostate cancer xenografts have been described by van Weerden and Romijn (Prostate 2000; 43:263-271). The xenografts were serially passaged subcutaneously in both shoulders of male Swiss nude mice.
Data processing Normalization was performed using R-routines (Lowess method; http://cmfdb.nki.nl/). All spots with an R-value below 3 or with an average intensity less than 0.4 of the median spot intensity per subarray were considered to be insufficiently reliable and were excluded from the data analysis.
 
Submission date Jan 13, 2006
Last update date Jan 23, 2006
Contact name Peter Hendriksen
E-mail(s) [email protected]
Organization name Wageningen University & Research
Department RIKILT
Street address Akkermaalsbos 2
City Wageningen
ZIP/Postal code 6708 WB
Country Netherlands
 
Platform ID GPL3349
Series (1)
GSE4084 Human prostate cancer xenografts on intact mice or after castration.

Data table header descriptions
ID_REF spot number
VALUE normalized log2 ratio of xenograft / common reference
CH1_SIG_MEAN Mean signal intensity of the spot of channel 1
CH1_BKD_MEAN Mean intensity of the background of channel 1
CH2_SIG_MEAN Mean signal intensity of the spot of channel 2
CH2_BKD_MEAN Mean intensity of the background of channel 2

Data table
ID_REF VALUE CH1_SIG_MEAN CH1_BKD_MEAN CH2_SIG_MEAN CH2_BKD_MEAN
1 -0.23 4688.258824 2597.185185 4322.072917 2025.467742
2 -0.05 2927.461538 2562.898734 2364.87037 1990.826923
3 0.28 5857.117021 2610.575472 4491.813472 2060.173913
4 0.26 3530.530303 2570.034722 2837.425 2006.769231
5 2514.208333 2524 1960.186528 1949.136564
6 2524.652778 2513.573604 1965.180556 1959.573604
7 2520.551724 2519.934884 1965.682759 1955.776744
8 2523.247706 2521.84136 1984.477064 1952.810198
9 2544.733945 2519.714286 1962 1967.58885
10 2544.683938 2521.47027 1975.585492 1980.551351
11 2539.59633 2516.981132 1984.366972 1969.385445
12 2556.293578 2528.507553 1959.724771 1972.012085
13 2530.662069 2513.842932 1967.641379 1964.031414
14 2531.145161 2524.625455 1965.758065 1969.563636
15 2525.637306 2513.894273 1964.414508 1973.004405
16 2520.715596 2516.862454 1966.366972 1981.32342
17 2532.513761 2544.387931 1966.238532 1984.087719
18 2555.06422 2527.672026 1975.853211 1979.292605
19 2541.903448 2519.105455 1988.731034 1978.923636
20 2522.217617 2528.335329 1976.455959 1968.586826

Total number of rows: 19185

Table truncated, full table size 1042 Kbytes.




Supplementary data files not provided
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