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Sample GSM91999 Query DataSets for GSM91999
Status Public on Jan 05, 2008
Title Leaf_sorbitol1
Sample type RNA
 
Source name leaf
Organism Arabidopsis thaliana
Characteristics control for sucrose feeding (leaf_sucrose1)
ecotype: Col-0
developmental stage: full grown leaves of non-flowering plants
Treatment protocol Source leaves were cut at the end of the day from non-flowering plants. Leaf peteoles were recut under buffer (2mM MES, pH6.5) and placed in buffer + 100mM sorbitol for 13hours in the dark. After incubation discs were snap-frozen in liquid nitrogen.
Growth protocol Plants were grown in a phytotron with a 14h day / 10h night. Temperature: 20°C / 16°C. Humidity: 60% / 75%. Lightintensity: .
Extracted molecule total RNA
Extraction protocol Total RNA extraction using TRIzol Total RNA Isolation Reagent, according to the protocol supplied by the manufacturer GibcoBRL Life-Technologies.
Label biotin
Label protocol 10µg total RNA was biotin labelled
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description source leaves of Wild type Arabidopsis thaliana Col0 rosette plants.
Data processing MAS5
 
Submission date Jan 12, 2006
Last update date Jan 08, 2007
Contact name Joost T. van Dongen
E-mail(s) [email protected]
Phone +49 (0)331 5678353
URL http://www.mpimp-golm.mpg.de
Organization name Max Planck Institute of Molecular Plant Physiology
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code D-14476
Country Germany
 
Platform ID GPL198
Series (1)
GSE4022 effect of sucrose feeding to detached leaves

Data table header descriptions
ID_REF
VALUE MAS5 calculated expression values
ABS_CALL detection call as defined by MAS5: present (P), absent (A), or marginal (M)
DETECTION P-VALUE indicates the significance level of the detection call as calculated by MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 42.7 P 0.00141
AFFX-BioB-M_at 46.9 P 0.00007
AFFX-BioB-3_at 42.7 P 0.000662
AFFX-BioC-5_at 141.4 P 0.000195
AFFX-BioC-3_at 69.3 P 0.00011
AFFX-BioDn-5_at 110.8 P 0.000052
AFFX-BioDn-3_at 517.2 P 0.000044
AFFX-CreX-5_at 1186.1 P 0.000044
AFFX-CreX-3_at 1551.6 P 0.000044
AFFX-DapX-5_at 0.7 A 0.891021
AFFX-DapX-M_at 1.9 A 0.783476
AFFX-DapX-3_at 0.4 A 0.997725
AFFX-LysX-5_at 0.1 A 0.994435
AFFX-LysX-M_at 0.7 A 0.987453
AFFX-LysX-3_at 0.4 A 0.737173
AFFX-PheX-5_at 0.8 A 0.9273
AFFX-PheX-M_at 0.5 A 0.932322
AFFX-PheX-3_at 2.2 A 0.794268
AFFX-ThrX-5_at 0.6 A 0.976071
AFFX-ThrX-M_at 0.4 A 0.99156

Total number of rows: 22810

Table truncated, full table size 574 Kbytes.




Supplementary data files not provided

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