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Sample GSM914887 Query DataSets for GSM914887
Status Public on Oct 23, 2013
Title other disease HIV negative South Africa WB_6_SA_20255
Sample type RNA
 
Source name Whole Blood from patient with other disease
Organism Homo sapiens
Characteristics disease state: other disease
hiv status: HIV negative
geographical region: South Africa
tissue: whole blood
Extracted molecule total RNA
Extraction protocol Standard PAXgene® blood RNA extraction kit protocol (Qiagen).
Label biotin
Label protocol Standard Illumina TotalPrep RNA Amplification kits (Applied Biosystems).
 
Hybridization protocol Standard Illumina hybridisation protocol.
Scan protocol Standard Illumina scanning protocol.
Description Sample name: 5667664040_L
Data processing The data were normalised using Genome Studio, with background subtracted and quantile normalised.
 
Submission date Apr 13, 2012
Last update date Dec 17, 2018
Contact name Victoria Wright
E-mail(s) [email protected]
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platform ID GPL10558
Series (1)
GSE37250 Genome-wide transcriptional profiling of HIV positive and negative adults with active tuberculosis, latent TB infection and other diseases

Data table header descriptions
ID_REF
VALUE background subtracted and quantile normalized signal
5667664040_L.Detection Pval

Data table
ID_REF VALUE 5667664040_L.Detection Pval
ILMN_1762337 -7.054249 0.6038961
ILMN_2055271 55.66271 0.03376623
ILMN_1736007 13.51965 0.3051948
ILMN_2383229 -8.590481 0.6207792
ILMN_1806310 10.2832 0.3441558
ILMN_1779670 1.423726 0.474026
ILMN_1653355 27.43708 0.1571429
ILMN_1717783 -55.22359 0.9818182
ILMN_1705025 17.86671 0.2558441
ILMN_1814316 2.571606 0.4584416
ILMN_2359168 -20.93096 0.7597402
ILMN_1731507 -39.44596 0.887013
ILMN_1787689 21.02746 0.2207792
ILMN_3241953 183.1357 0
ILMN_1745607 -26.04707 0.7883117
ILMN_2136495 -31.22551 0.8285714
ILMN_1668111 12.05239 0.3181818
ILMN_2295559 3.841941 0.438961
ILMN_1735045 -47.57039 0.9428571
ILMN_1680754 47.63969 0.05454545

Total number of rows: 47323

Table truncated, full table size 1409 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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