|
| Status |
Public on Jul 14, 2012 |
| Title |
HighLDL_HCHF_8623 |
| Sample type |
SRA |
| |
|
| Source name |
HighLDL_HCHF
|
| Organism |
Papio hamadryas |
| Characteristics |
tissue: liver
|
| Treatment protocol |
Total RNA siolated using Trizol and miRNA enriched using miRVana miRNA Isolating Kit from Ambion.
|
| Growth protocol |
Baboon liver biospy collected and snap frozen in liquired nitrogen.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Libraries were constructed with the Illumina small RNA kit version 1.5
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
small RNA
|
| Data processing |
Data processed using mirTools software and aligned to human genome and small RNA databases.
Supplementary_files_format_and_content: Fasta files contain trimmed small RNA sequences with read counts
|
| |
|
| Submission date |
Apr 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Genesio Karere |
| E-mail(s) |
[email protected]
|
| Organization name |
Wake Forest Baptist Health Sciences
|
| Department |
Internal Medicne
|
| Street address |
1 medical center blvd
|
| City |
Winston-Salem |
| State/province |
NC |
| ZIP/Postal code |
78227 |
| Country |
USA |
| |
|
| Platform ID |
GPL15440 |
| Series (1) |
| GSE37249 |
Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons |
|
| Relations |
| SRA |
SRX142041 |
| BioSample |
SAMN00855357 |
