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Sample GSM911 Query DataSets for GSM911
Status Public on Feb 12, 2002
Title cdc15 110 min
Sample type RNA
 
Channel 1
Source name asynchronous
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 110 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = cdc15
Lot batch = y802n40
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL62
Series (1)
GSE23 cdc15 block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 836 776 12864 307 43 269 264 352 57 409 .793 0 -7.818 .01 37 16 299.163 225.684 .003 .004 .003 1360 37 32 39 90 97 -7.818
2 825 752 12225 286 22 269 264 352 29 381 .616 0 -8.72 .024 40 5 555.682 421.552 .002 .002 .002 1263 37 31 38 99 106 -8.72
3 788 864 6864 292 28 268 264 352 37 389 .723 0 -7.535 .029 35 5 245.143 185.514 .004 .005 .003 1164 37 31 38 108 115 -7.535
4 786 872 164 300 36 266 264 352 48 400 .532 0 -1.773 .2 8 8 4.556 3.417 .22 .293 .109 1159 37 31 38 117 124 -1.773
5 773 864 403 628 356 269 272 362 475 837 .9 0 .237 .385 18 16 1.132 .848 .883 1.179 .97 1159 37 31 38 126 133 .237
6 762 864 71 334 62 273 272 362 83 445 .522 0 .225 .649 8 13 1.145 .855 .873 1.169 .285 1159 37 31 38 135 142 .225
7 774 840 547 549 277 274 272 362 370 732 .91 0 -.564 .4 32 24 1.975 1.478 .506 .676 .489 1159 37 31 38 144 151 -.564
8 762 784 342 285 21 273 264 352 28 380 .551 0 -3.611 .097 24 5 16.286 12.214 .061 .082 .091 1159 37 31 38 153 160 -3.611
9 721 672 201 280 16 272 264 352 21 373 .463 0 -3.259 .141 10 5 12.563 9.571 .08 .104 .087 1159 37 31 38 162 169 -3.259
10 672 632 165 308 44 267 264 352 58 410 .454 0 -1.508 .214 10 8 3.75 2.845 .267 .352 .127 1159 37 31 38 171 178 -1.508
11 615 608 74 345 81 265 264 352 108 460 .506 0 .545 .667 8 10 .914 .685 1.095 1.459 .299 1159 37 31 38 180 187 .545
12 555 584 81 310 46 263 264 352 61 413 .459 0 -.409 .25 8 10 1.761 1.328 .568 .753 .316 1159 37 31 38 189 196 -.409
13 537 576 991 1212 948 264 264 352 1264 1616 .944 0 .351 1 35 37 1.045 .784 .957 1.275 .97 1159 37 31 38 198 205 .351
14 530 568 77 364 100 265 264 352 133 485 .598 0 .788 .75 8 16 .77 .579 1.299 1.727 .549 1159 37 31 38 207 214 .788
15 522 560 165 350 86 267 264 352 114 466 .793 0 -.533 .4 13 13 1.919 1.447 .521 .691 .49 1159 37 31 38 216 223 -.533
16 518 560 96 342 78 267 264 352 104 456 .718 0 .115 .6 8 13 1.231 .923 .813 1.083 .53 1159 37 31 38 225 232 .115
17 512 552 110 344 80 266 264 352 106 458 .69 0 -.053 .672 8 10 1.375 1.038 .727 .964 .573 1159 37 31 38 234 241 -.053
18 509 552 117 320 56 266 264 352 74 426 .735 0 -.661 .5 10 8 2.089 1.581 .479 .632 .447 1159 37 31 38 243 250 -.661
19 506 544 88 313 49 264 264 352 65 417 .82 0 -.437 .692 8 10 1.796 1.354 .557 .739 .565 1159 37 31 38 252 259 -.437
20 503 544 99 337 73 262 264 352 97 449 .754 0 -.029 .333 5 13 1.356 1.021 .737 .98 .594 1159 37 31 38 261 268 -.029

Total number of rows: 8832

Table truncated, full table size 1006 Kbytes.




Supplementary data files not provided
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