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Sample GSM90298 Query DataSets for GSM90298
Status Public on Jan 04, 2006
Title Wild-Type WS-O Seedling 4h Dex 1
Sample type RNA
 
Source name Wild-Type WS-O Seedling
Organism Arabidopsis thaliana
Characteristics Genotype: Ws-0, Wild-Type; Tissue: 8 day old seedling; Replicate: 1 of 2
Treatment protocol As per Braybrook et al (PNAS, 2006)
Growth protocol As per Braybrook et al (PNAS, 2006)
Extracted molecule polyA RNA
Extraction protocol As per Stone et al (PNAS, 2001)
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description 8 day old wild-type WS-O seedlings 4 hour Dexamethasone induction
Data processing MAS 5.0
 
Submission date Dec 31, 2005
Last update date Aug 28, 2018
Contact name Siobhan A Braybrook
E-mail(s) [email protected]
Organization name University of California, Davis
Department Plant Biology
Lab Harada Lab
Street address 1 Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platform ID GPL198
Series (1)
GSE3959 RNA changes induced by LEAFY COTYLEDON2 activity in Arabidopsis seedlings
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF Affymetrix probe ID
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected(Present ; P), not detected (Absent; A), or marginally detected(Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 694.5 P 0.000297
AFFX-BioB-M_at 1164.2 P 0.000052
AFFX-BioB-3_at 962 P 0.000052
AFFX-BioC-5_at 1482.6 P 0.000044
AFFX-BioC-3_at 1012.2 P 0.000044
AFFX-BioDn-5_at 1983.6 P 0.000044
AFFX-BioDn-3_at 7507.1 P 0.000044
AFFX-CreX-5_at 16460.9 P 0.000044
AFFX-CreX-3_at 21559.4 P 0.000044
AFFX-DapX-5_at 3.9 A 0.834139
AFFX-DapX-M_at 41.3 A 0.574038
AFFX-DapX-3_at 6 A 0.945787
AFFX-LysX-5_at 11.8 A 0.724854
AFFX-LysX-M_at 4.8 A 0.963431
AFFX-LysX-3_at 14.2 A 0.686277
AFFX-PheX-5_at 12.1 A 0.783476
AFFX-PheX-M_at 4.4 A 0.932322
AFFX-PheX-3_at 8.2 A 0.897835
AFFX-ThrX-5_at 5.4 A 0.883887
AFFX-ThrX-M_at 41.4 A 0.455413

Total number of rows: 22810

Table truncated, full table size 589 Kbytes.




Supplementary file Size Download File type/resource
GSM90298.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM90298.EXP.gz 480 b (ftp)(http) EXP

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