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Status
Public on Apr 24, 2008
Title
csn4-1_mutant replicate 3
Sample type
RNA
Source name
7 day old seedlings
Organism
Arabidopsis thaliana Characteristics
mutant, 7 day old seedlings, light grown
Extracted molecule
total RNA
Extraction protocol
Approximately 80 mg from 7 day old light grown csn4-1 mutant seedlings were collected and ground to a fine powder under liquid Nitrogen. Samples were lysed in separate groups in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 6 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
csn4-1 mutant 7 day old seedlings light grown
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Dec 15, 2005
Last update date
Aug 28, 2018
Contact name
Claus Schwechheimer
E-mail(s)
[email protected] Organization name
TUM
Department
Plant Systems Biology
Street address
Emil-Ramann-Str. 4
City
Freising
ZIP/Postal code
85354
Country
Germany
Platform ID
GPL198 Series (2)
GSE3865 CSN4-1 mutant analysis
GSE9728 COP9 signalosome (csn) mutant analysis
Relations Reanalyzed by
GSE118579 Reanalyzed by
GSE119083
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was P (P), A (A), M (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
892
P
0.00007
AFFX-BioB-M_at
1245.7
P
0.00004
AFFX-BioB-3_at
827.1
P
0.00004
AFFX-BioC-5_at
2969.3
P
0.00004
AFFX-BioC-3_at
2333.1
P
0.00004
AFFX-BioDn-5_at
6009.8
P
0.00004
AFFX-BioDn-3_at
8801.1
P
0.00004
AFFX-CreX-5_at
23421.7
P
0.00004
AFFX-CreX-3_at
36834.1
P
0.00004
AFFX-DapX-5_at
3844.9
P
0.00004
AFFX-DapX-M_at
4917.6
P
0.00004
AFFX-DapX-3_at
7831.6
P
0.00004
AFFX-LysX-5_at
366
P
0.00005
AFFX-LysX-M_at
470.9
P
0.00006
AFFX-LysX-3_at
1152.2
P
0.00006
AFFX-PheX-5_at
718.4
P
0.00004
AFFX-PheX-M_at
752.9
P
0.00004
AFFX-PheX-3_at
1578.9
P
0.00005
AFFX-ThrX-5_at
1183.4
P
0.00007
AFFX-ThrX-M_at
1443.6
P
0.00004
22810 569 Kbytes .Supplementary file Size Download File type/resource GSM88051.CEL.gz
1.8 Mb
(ftp) (http) CEL
Processed data included within Sample table
