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Sample GSM872228 Query DataSets for GSM872228
Status Public on Mar 14, 2012
Title BMM_F2A_114_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.7034015928149 32.95911 10.7818948457053 0.1641604 47
ILMN_2956159 13.5106503771691 9411.229 1956.5257185511 0 52
ILMN_2704576 4.61301352397556 31.92525 10.9696878447278 0.2380952 52
ILMN_3135931 13.5369951607971 9440.804 2329.36970053682 0 51
ILMN_2516699 13.7837814497459 10720.48 2340.46800855583 0 32
ILMN_2964873 14.1316861494688 14624.31 4310.41931665931 0 41
ILMN_1377920 14.0303542221077 13095.2 4080.72515466086 0 118
ILMN_2747959 6.42314825579606 76.47113 36.9029383164194 0 33
ILMN_2666018 4.68394572499336 32.71487 13.9119105140952 0.1741855 37
ILMN_2851231 13.1630855393705 7104.957 2035.73555944074 0 31
ILMN_2948086 12.8638313026327 5893.896 1633.33291820165 0 48
ILMN_2675747 12.697441244125 5218.873 1516.34674255683 0 48
ILMN_1258988 11.3726437952809 2052.447 564.312257558496 0 52
ILMN_2876066 14.3217164163927 15426.28 4845.31136119785 0 51
ILMN_2588052 14.2617429273087 15303.36 4772.87903105906 0 93
ILMN_2658908 4.2986863677531 28.94587 12.5327290928034 0.5238096 44
ILMN_2876071 13.9824632190025 13073.67 4246.71591424594 0 41
ILMN_2696977 13.1257171971427 6980.918 1733.22960140008 0 52
ILMN_2740432 12.4022755628588 4122.013 1692.0316002781 0 43
ILMN_3126986 12.9559107990732 6313.996 1365.39252416367 0 45

Total number of rows: 25697

Table truncated, full table size 1643 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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