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Sample GSM872191 Query DataSets for GSM872191
Status Public on Mar 14, 2012
Title BMM_F2D_101_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.47781804447767 28.86966 10.111602 0.3972431 36
ILMN_2956159 13.4669907339079 7218.556 1592.05441088046 0 33
ILMN_2704576 4.66592034805547 30.28989 9.05350097764992 0.2243108 53
ILMN_3135931 13.61103989448 7828.956 2211.38771600854 0 52
ILMN_2516699 13.8206889427679 8663.932 2382.10036077562 0 24
ILMN_2964873 14.1316861494688 11368.67 3814.31426653711 0 34
ILMN_1377920 14.0303542221077 10910.36 3382.68042330539 0 150
ILMN_2747959 5.5073522598056 39.08574 11.6295527368769 0.001253133 41
ILMN_2666018 4.93493319891064 32.56476 11.4326599159448 0.07769424 34
ILMN_2851231 13.1439082742342 5034.726 1619.3658 0 36
ILMN_2948086 12.8354625648841 4040.4 1520.38741961714 0 52
ILMN_2675747 13.0180554292709 4697.983 1748.18225185579 0 53
ILMN_1258988 11.2333750362008 1307.685 430.155099970685 0 47
ILMN_2876066 14.2617429273087 13025.59 4232.1219867257 0 42
ILMN_2588052 14.1981373709814 11818.79 3906.67469252125 0 77
ILMN_2658908 4.03070344781752 25.75831 8.39776270300263 0.8333333 38
ILMN_2876071 14.0772940094986 11264.87 4403.62474208204 0 39
ILMN_2696977 13.3006311488776 5838.392 1320.36397278298 0 37
ILMN_2740432 12.319378618536 2641.247 961.205014391342 0 34
ILMN_3126986 12.987350927516 4559.976 1496.0841375235 0 47

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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