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Sample GSM872177 Query DataSets for GSM872177
Status Public on Mar 14, 2012
Title BMM_F2A_138_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.678498483125 34.25903 9.09581032130178 0.1503759 44
ILMN_2956159 13.6651114672082 11808.35 2996.007 0 36
ILMN_2704576 4.41313086323284 31.3641 10.3644165710531 0.4235589 45
ILMN_3135931 13.8538136213455 12817.54 2388.0852 0 36
ILMN_2516699 13.9824632190025 15340.37 4150.35202423704 0 34
ILMN_2964873 14.3217164163927 18555.5 4700.30939335114 0 41
ILMN_1377920 13.7837814497459 12491.77 3498.5621 0 121
ILMN_2747959 6.75734735207819 111.8736 43.437439542746 0 39
ILMN_2666018 4.63617290013638 33.72466 11.9047104794699 0.1804511 40
ILMN_2851231 13.2799227727492 8998.411 2514.979348917 0 39
ILMN_2948086 12.8490849475816 6475.356 1988.40279406261 0 44
ILMN_2675747 12.987350927516 7027.081 1793.0885 0 49
ILMN_1258988 11.7596921078177 3163.592 802.940792220473 0 51
ILMN_2876066 14.0772940094986 16086.25 2790.8650643876 0 45
ILMN_2588052 13.9370770625561 14385.67 4019.01641375746 0 76
ILMN_2658908 4.47220208692436 31.9442 7.50132718625817 0.3471178 24
ILMN_2876071 14.1981373709814 16481.54 4595.76271447654 0 51
ILMN_2696977 13.3006311488776 9069.257 2227.03336419529 0 31
ILMN_2740432 11.9849521621604 3733.448 1340.2368 0 36
ILMN_3126986 13.0886597842807 7660.271 1952.17427250975 0 41

Total number of rows: 25697

Table truncated, full table size 1637 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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