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Sample GSM872127 Query DataSets for GSM872127
Status Public on Mar 14, 2012
Title BMM_F2D_3_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) [email protected]
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.9870963830184 -5.742772 14.0163886865024 0.8646616 58
ILMN_2956159 13.5848431628886 13706.31 3074.18864485627 0 37
ILMN_2704576 4.88514825487458 5.945781 17.191377 0.131579 49
ILMN_3135931 13.6361716421311 14074.13 2031.8646 0 36
ILMN_2516699 13.6651114672082 14626.56 3854.43025060589 0 39
ILMN_2964873 14.0303542221077 18601.83 3416.47403380859 0 53
ILMN_1377920 13.6909941243974 14968.4 3474.93687203981 0 145
ILMN_2747959 6.256919113157 36.50876 33.7283388220244 0 30
ILMN_2666018 4.14992014249849 -3.566442 14.8148197227201 0.7518797 46
ILMN_2851231 12.9082577234049 7046.562 1821.12385496971 0 31
ILMN_2948086 12.4022755628588 5166.416 907.948102143289 0 40
ILMN_2675747 12.819512360874 6905.235 1157.16513120837 0 48
ILMN_1258988 10.2590275297136 1071.423 215.062488248352 0 44
ILMN_2876066 14.3217164163927 25393.32 4114.18913936325 0 58
ILMN_2588052 13.9824632190025 17988.61 3937.57377637823 0 86
ILMN_2658908 4.02856734341452 -5.177121 14.918562925278 0.8358396 31
ILMN_2876071 14.0772940094986 20089.52 4545.14856341659 0 52
ILMN_2696977 13.4462459706025 12493.25 2317.34784935334 0 46
ILMN_2740432 12.4954960788457 5373.554 1612.6033 0 49
ILMN_3126986 13.1630855393705 8847.66 1759.91560860325 0 46

Total number of rows: 25697

Table truncated, full table size 1656 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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