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Status
Public on Dec 09, 2005
Title
PP6, chip HG-U133A
Sample type
RNA
Source name
Muscle stem cell, Muscle
Organism
Homo sapiens Characteristics
Strain:
Growth protocol
Growth medium: F10
Extracted molecule
total RNA
Extraction protocol
RNA prep method: TRIzol
Label
Biotin
Description
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/ ). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/ ) by Dr. Jacques P. Tremblay ([email protected] ; 2705 boulevard Laurier) for analysis.http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28 http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28#SAMPLE_29
Data processing
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
Submission date
Dec 07, 2005
Last update date
Jan 19, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL96 Series (1)
GSE3769 Comparison of muscle stem cell preplates and myoblasts.
Data table header descriptions ID_REF VALUE 'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06.
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
197.495
P
0.000195116
AFFX-BioB-M_at
504.176
P
6.02111e-05
AFFX-BioB-3_at
339.34
P
4.42873e-05
AFFX-BioC-5_at
484.961
P
6.02111e-05
AFFX-BioC-3_at
424.608
P
4.42873e-05
AFFX-BioDn-5_at
586.145
P
4.42873e-05
AFFX-BioDn-3_at
2856.12
P
5.16732e-05
AFFX-CreX-5_at
4799.9
P
4.42873e-05
AFFX-CreX-3_at
6515.61
P
4.42873e-05
AFFX-DapX-5_at
10.9516
A
0.0956669
AFFX-DapX-M_at
13.9407
A
0.102165
AFFX-DapX-3_at
0.983908
A
0.98333
AFFX-LysX-5_at
4.46323
A
0.760937
AFFX-LysX-M_at
1.87425
A
0.794268
AFFX-LysX-3_at
1.18944
A
0.876428
AFFX-PheX-5_at
1.18859
A
0.945787
AFFX-PheX-M_at
7.291
A
0.617401
AFFX-PheX-3_at
4.54158
A
0.368438
AFFX-ThrX-5_at
2.36873
A
0.963431
AFFX-ThrX-M_at
2.11404
A
0.772364
22283 657 Kbytes .Supplementary file Size Download File type/resource GSM86503.CEL.gz
3.2 Mb
(ftp) (http) CEL
GSM86503.EXP.gz
516 b
(ftp) (http) EXP
