 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 15, 2024 |
| Title |
Meth.Sample.62 |
| Sample type |
genomic |
| |
|
| Source name |
breast
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast
case_control: Control
age: 73
race: WHITE
dcis.pam50_subtype: Her2
expressioncluster: 3
methylationcluster: 1
|
| Treatment protocol |
N/A
|
| Growth protocol |
N/A
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Nucleic Acids were extracted using AllPrep DNA/RNA FFPE kit (Qiagen, Valencia, CA) Extracted DNA was quantified by Qubit 2.0 fluorometer (Life Technologies, Carlsbad, CA) and stored at -80°C
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Bisulfite-treated genomic DNA was restored using the Illumina Infinium HumanMethylation450K BeadChip Kit (WG-314-1003)
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
Meth, Control, Her2
|
| Data processing |
The data were normalized using the FunNorm algorithm using minfi in R
|
| |
|
| Submission date |
Nov 07, 2024 |
| Last update date |
Nov 15, 2024 |
| Contact name |
Michael Considine |
| E-mail(s) |
[email protected]
|
| Organization name |
Johns Hopkins University
|
| Street address |
550 North Broadway
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE281307 |
Multimodal Genome-wide Survey of Progressing and Non-progressing Breast Ductal Carcinoma In-Situ |
|
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8618480_3999431115_R04C02_Grn.idat.gz |
4.1 Mb |
(ftp)(http) |
IDAT |
| GSM8618480_3999431115_R04C02_Red.idat.gz |
4.1 Mb |
(ftp)(http) |
IDAT |
|
|
|
|
 |
