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Sample GSM857539 Query DataSets for GSM857539
Status Public on Jan 07, 2012
Title G9a knockdown cells, rep2
Sample type RNA
 
Source name MDA-MB231 cells, G9a knockdown
Organism Homo sapiens
Characteristics cell line: MDA-MB231
treatment: G9a knockdown
cell type: less metastatic breast cancer cells
Growth protocol Cells were grown in DMEM/F12 plus 10%FBS in 5%CO2 at 37C. Cells were trypsinized and harvested when in log-growth phase.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from cells using the Qiagen RNA purification kit following the manfacturer's protocol.
Label Biotin
Label protocol Labeling was performed at the core technician at the microarry core facility at the University of Kentucky School of Medicine.
 
Hybridization protocol Hybridization was performed at the core technician at the microarry core facility at the University of Kentucky School of Medicine.
Scan protocol Scanning was performed at the core technician at the microarry core facility at the University of Kentucky School of Medicine.
Description Gene expression array of less metastatic breast tumor cell line.
Data processing Data processing was performed at the core technician at the microarry core facility at the University of Kentucky School of Medicine.
 
Submission date Jan 06, 2012
Last update date Jan 07, 2012
Contact name Binhua P Zhou
E-mail(s) [email protected]
Phone 859-323-4474
Organization name University of Kentucky School of Medicine
Department Markey Cancer Center/Biochemistry
Lab Zhou's lab
Street address 789 South Limestone
City Lexington
State/province KY
ZIP/Postal code 40536
Country USA
 
Platform ID GPL6244
Series (1)
GSE34925 Expression data from knockdown of G9a in MDA-MB231 cells

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
7892501 5.61897
7892502 5.97046
7892503 4.59289
7892504 8.91866
7892505 5.1822
7892506 6.21797
7892507 7.42768
7892508 7.74379
7892509 13.483
7892510 6.14447
7892511 4.75784
7892512 8.13561
7892513 4.97101
7892514 12.1944
7892515 10.9276
7892516 7.43898
7892517 7.20075
7892518 5.54667
7892519 7.5893
7892520 10.4881

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM857539.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM857539.chp.gz 256.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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