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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV64.09_CHF_day25_Slide40 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV64.09_CHF_day25
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 25 post 80mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
3725.2 |
3.0 |
14619.2 |
80.5 |
0.9671 |
2.1131 |
-1.146 |
-1.920 |
| 2 |
608.9 |
2.6 |
395.8 |
13.2 |
-0.8363 |
-1.2748 |
0.438 |
0.735 |
| 3 |
735.8 |
0.6 |
1140.3 |
14.3 |
0.0441 |
0.3727 |
-0.329 |
-0.551 |
| 4 |
2135.5 |
0.6 |
1796.3 |
24.1 |
0.4147 |
0.1530 |
0.262 |
0.438 |
| 5 |
934.3 |
2.5 |
885.1 |
16.1 |
-0.4093 |
-0.5108 |
0.101 |
0.170 |
| 6 |
950.1 |
1.0 |
1784.1 |
11.3 |
-0.3910 |
0.1533 |
-0.544 |
-0.912 |
| 7 |
425.4 |
1.7 |
354.4 |
11.5 |
NULL |
NULL |
NULL |
NULL |
| 8 |
744.0 |
0.1 |
923.0 |
10.1 |
-0.6331 |
-0.4648 |
-0.168 |
-0.282 |
| 9 |
1541.4 |
1.3 |
3564.8 |
14.7 |
0.0901 |
0.8000 |
-0.710 |
-1.190 |
| 10 |
222.2 |
1.4 |
156.8 |
17.1 |
NULL |
NULL |
NULL |
NULL |
| 11 |
368.0 |
2.1 |
179.5 |
23.5 |
NULL |
NULL |
NULL |
NULL |
| 12 |
936.6 |
1.2 |
1536.2 |
25.4 |
-0.4054 |
0.0044 |
-0.410 |
-0.687 |
| 13 |
342.3 |
1.9 |
568.3 |
13.2 |
-1.4100 |
-0.9282 |
-0.482 |
-0.807 |
| 14 |
566.6 |
1.6 |
200.1 |
54.1 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2132.8 |
1.0 |
3443.3 |
12.9 |
0.4133 |
0.7681 |
-0.355 |
-0.595 |
| 16 |
530.5 |
2.2 |
316.3 |
13.1 |
-0.9732 |
-1.4915 |
0.518 |
0.868 |
| 17 |
1914.9 |
3.2 |
2374.2 |
24.0 |
0.3049 |
0.4159 |
-0.111 |
-0.186 |
| 18 |
198.6 |
1.4 |
341.0 |
9.1 |
-1.9525 |
-1.4071 |
-0.545 |
-0.914 |
| 19 |
1286.0 |
9.8 |
168.9 |
19.6 |
NULL |
NULL |
NULL |
NULL |
| 20 |
441.9 |
2.1 |
767.1 |
11.3 |
-1.1554 |
-0.6408 |
-0.515 |
-0.862 |
Total number of rows: 4803
Table truncated, full table size 242 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85137_Ch1.imagene.gz |
839.2 Kb |
(ftp)(http) |
IMAGENE |
| GSM85137_Ch2.imagene.gz |
862.6 Kb |
(ftp)(http) |
IMAGENE |
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