 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 01, 2006 |
| Title |
RV64.08_HYP_day25_Slide42 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV64.08_HYP_day25
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 25 post 30mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
5504.4 |
54.5 |
14911.7 |
154.2 |
1.0740 |
1.9870 |
-0.913 |
-1.609 |
| 2 |
731.2 |
5.4 |
504.9 |
41.2 |
-1.0701 |
-1.2790 |
0.209 |
0.368 |
| 3 |
660.7 |
5.2 |
1576.4 |
61.5 |
-0.4413 |
0.4871 |
-0.928 |
-1.636 |
| 4 |
2569.6 |
17.1 |
2375.3 |
43.8 |
0.2673 |
0.2454 |
0.022 |
0.039 |
| 5 |
1475.4 |
8.3 |
1125.9 |
42.1 |
-0.3216 |
-0.4776 |
0.156 |
0.275 |
| 6 |
1495.7 |
17.5 |
1745.1 |
27.0 |
-0.3136 |
-0.0428 |
-0.271 |
-0.477 |
| 7 |
806.1 |
9.7 |
506.4 |
36.5 |
NULL |
NULL |
NULL |
NULL |
| 8 |
1373.6 |
9.1 |
1124.8 |
45.5 |
-0.3987 |
-0.4816 |
0.083 |
0.146 |
| 9 |
2119.9 |
26.6 |
3791.9 |
50.1 |
0.0564 |
0.6918 |
-0.635 |
-1.120 |
| 10 |
472.5 |
6.3 |
244.5 |
42.7 |
NULL |
NULL |
NULL |
NULL |
| 11 |
580.4 |
12.1 |
217.5 |
45.4 |
NULL |
NULL |
NULL |
NULL |
| 12 |
1885.0 |
17.8 |
2093.0 |
52.2 |
-0.0651 |
0.1197 |
-0.185 |
-0.326 |
| 13 |
656.0 |
91.0 |
891.3 |
116.4 |
-1.5762 |
-0.8551 |
-0.721 |
-1.271 |
| 14 |
1103.4 |
11.1 |
369.3 |
50.0 |
NULL |
NULL |
NULL |
NULL |
| 15 |
3104.0 |
4.4 |
4029.7 |
39.4 |
0.4739 |
0.7525 |
-0.279 |
-0.491 |
| 16 |
791.5 |
45.5 |
474.8 |
49.1 |
-1.0408 |
-1.3597 |
0.319 |
0.562 |
| 17 |
3640.2 |
8.4 |
3125.9 |
50.6 |
0.6424 |
0.5067 |
0.136 |
0.239 |
| 18 |
544.1 |
6.3 |
426.2 |
27.2 |
-1.3888 |
-1.4208 |
0.032 |
0.056 |
| 19 |
1343.8 |
25.3 |
260.8 |
49.1 |
NULL |
NULL |
NULL |
NULL |
| 20 |
857.6 |
7.8 |
852.2 |
21.6 |
-0.9023 |
-0.7288 |
-0.174 |
-0.306 |
Total number of rows: 4803
Table truncated, full table size 248 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85136_Ch1.imagene.gz |
884.9 Kb |
(ftp)(http) |
IMAGENE |
| GSM85136_Ch2.imagene.gz |
879.5 Kb |
(ftp)(http) |
IMAGENE |
|
|
|
|
 |
