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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV63.12_CHF_day19_Slide43 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV63.12_CHF_day19
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 19 post 80mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
6543.9 |
2.6 |
9455.3 |
4.1 |
1.5757 |
2.0636 |
-0.488 |
-1.032 |
| 2 |
780.2 |
1.7 |
320.6 |
1.7 |
-0.6202 |
-0.9484 |
0.328 |
0.694 |
| 3 |
1985.2 |
0.3 |
1022.1 |
7.2 |
0.7759 |
0.3901 |
0.386 |
0.816 |
| 4 |
2527.3 |
3.9 |
1367.2 |
6.4 |
0.5931 |
0.3411 |
0.252 |
0.533 |
| 5 |
691.1 |
1.9 |
489.7 |
7.0 |
-0.7458 |
-0.5799 |
-0.166 |
-0.351 |
| 6 |
1310.5 |
0.2 |
1101.7 |
1.0 |
-0.0830 |
0.1526 |
-0.236 |
-0.498 |
| 7 |
248.3 |
1.7 |
149.6 |
9.6 |
NULL |
NULL |
NULL |
NULL |
| 8 |
627.0 |
2.0 |
591.8 |
0.9 |
-0.8466 |
-0.4004 |
-0.446 |
-0.944 |
| 9 |
1973.6 |
0.7 |
1947.6 |
1.8 |
0.3392 |
0.6589 |
-0.320 |
-0.676 |
| 10 |
243.0 |
0.9 |
71.0 |
4.9 |
NULL |
NULL |
NULL |
NULL |
| 11 |
711.0 |
1.2 |
78.0 |
8.1 |
NULL |
NULL |
NULL |
NULL |
| 12 |
1946.1 |
2.2 |
1423.0 |
13.0 |
0.3239 |
0.3727 |
-0.049 |
-0.103 |
| 13 |
430.9 |
1.3 |
353.9 |
3.3 |
-1.2333 |
-0.8642 |
-0.369 |
-0.781 |
| 14 |
744.1 |
3.2 |
168.3 |
25.9 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2644.2 |
1.2 |
2091.7 |
2.0 |
0.6408 |
0.7223 |
-0.082 |
-0.172 |
| 16 |
335.3 |
0.4 |
164.1 |
2.6 |
-1.4905 |
-1.5532 |
0.063 |
0.133 |
| 17 |
2065.7 |
1.7 |
1600.0 |
2.7 |
0.3858 |
0.4835 |
-0.098 |
-0.207 |
| 18 |
312.3 |
1.3 |
166.5 |
1.6 |
-1.5667 |
-1.5344 |
-0.032 |
-0.068 |
| 19 |
557.7 |
0.9 |
39.2 |
2.7 |
NULL |
NULL |
NULL |
NULL |
| 20 |
595.6 |
1.2 |
477.3 |
3.1 |
-0.8984 |
-0.5958 |
-0.303 |
-0.640 |
Total number of rows: 4803
Table truncated, full table size 237 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85130_Ch1.imagene.gz |
847.3 Kb |
(ftp)(http) |
IMAGENE |
| GSM85130_Ch2.imagene.gz |
840.5 Kb |
(ftp)(http) |
IMAGENE |
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