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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 01, 2012 |
| Title |
RenLab-H3K27ac-spleen |
| Sample type |
SRA |
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| Source name |
Mouse spleen
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| Organism |
Mus musculus |
| Characteristics |
strain: C57Bl/6
antibody: Active motif, 39133
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| Treatment protocol |
None
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
H3K27ac IP
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| Data processing |
fastq: Illumina's Genome Analyzer Pipeline
bam files: Alignment to mm9 using Bowtie with a seed length of 32 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept.
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| Submission date |
Dec 20, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Bing Ren |
| E-mail(s) |
[email protected]
|
| Organization name |
University of California, San Diego
|
| Street address |
9500 Gilman Drive
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platform ID |
GPL13112 |
| Series (2) |
| GSE29184 |
A draft map of cis-regulatory sequences in the mouse genome |
| GSE29218 |
A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq] |
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| Relations |
| SRA |
SRX112929 |
| BioSample |
SAMN00768103 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM851279_RenLab-H3K27ac-spleen-DM709.bam |
458.8 Mb |
(ftp)(http) |
BAM |
| GSM851279_RenLab-H3K27ac-spleen-DM710.bam |
547.0 Mb |
(ftp)(http) |
BAM |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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