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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV83.09_CHF_day10_Slide76 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV83.09_CHF_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post 80mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
11950.7 |
18.2 |
13440.9 |
15.2 |
1.9898 |
2.0381 |
-0.048 |
-0.1679 |
| 2 |
798.9 |
1.9 |
457.7 |
0.8 |
-0.4443 |
-0.8064 |
0.362 |
1.2596 |
| 3 |
2366 |
1.6 |
2053.6 |
1.3 |
0.5338 |
0.4577 |
0.076 |
0.2647 |
| 4 |
1831.3 |
2.5 |
1622 |
1.3 |
0.3027 |
0.2591 |
0.044 |
0.152 |
| 5 |
776.3 |
0.5 |
536.5 |
0.9 |
-0.4685 |
-0.6727 |
0.204 |
0.7103 |
| 6 |
1261.6 |
2.2 |
1278.9 |
4.5 |
-0.0328 |
0.0568 |
-0.09 |
-0.3116 |
| 7 |
109 |
2 |
90.2 |
3.4 |
NULL |
NULL |
NULL |
NULL |
| 8 |
1340.3 |
1.2 |
935.6 |
0.5 |
0.0224 |
-0.2037 |
0.226 |
0.7867 |
| 9 |
2677.5 |
0.6 |
3641 |
1.6 |
0.6454 |
0.9397 |
-0.294 |
-1.0238 |
| 10 |
132.2 |
2.7 |
116.6 |
0.7 |
NULL |
NULL |
NULL |
NULL |
| 11 |
157.5 |
1.7 |
107.9 |
5.5 |
NULL |
NULL |
NULL |
NULL |
| 12 |
769.9 |
2.4 |
901.5 |
0.3 |
-0.4782 |
-0.2348 |
-0.243 |
-0.847 |
| 13 |
443 |
2.3 |
429.2 |
0.5 |
-0.9773 |
-0.8601 |
-0.117 |
-0.4079 |
| 14 |
372.7 |
4.9 |
177.4 |
39.1 |
NULL |
NULL |
NULL |
NULL |
| 15 |
1830.7 |
3.3 |
1978.5 |
0.7 |
0.302 |
0.4266 |
-0.125 |
-0.4335 |
| 16 |
476.5 |
3.8 |
187.7 |
2.6 |
-0.9143 |
-1.5666 |
0.652 |
2.2697 |
| 17 |
1908.7 |
3.6 |
2285.4 |
3.2 |
0.3395 |
0.547 |
-0.208 |
-0.7222 |
| 18 |
283.7 |
1.5 |
215.9 |
1.2 |
-1.3782 |
-1.4419 |
0.064 |
0.2215 |
| 19 |
247.3 |
3.5 |
180.6 |
3.5 |
NULL |
NULL |
NULL |
NULL |
| 20 |
528.6 |
2.9 |
685.1 |
2 |
-0.8186 |
-0.4678 |
-0.351 |
-1.2205 |
Total number of rows: 4803
Table truncated, full table size 234 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85070_Ch1.imagene.gz |
847.0 Kb |
(ftp)(http) |
IMAGENE |
| GSM85070_Ch2.imagene.gz |
829.8 Kb |
(ftp)(http) |
IMAGENE |
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