 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 01, 2006 |
| Title |
RV82.09_CHF_day10_Slide58 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV82.09_CHF_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post 80mg monocrotaline/kg bw injection
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
7064.4 |
0.5 |
15360.7 |
10.8 |
1.696 |
2.0744 |
-0.378364138 |
-0.7586 |
| 2 |
377.3 |
2.7 |
527.3 |
2.1 |
-1.0855 |
-0.8126 |
-0.272933478 |
-0.5472 |
| 3 |
2581.4 |
4.2 |
1890.9 |
3.9 |
0.7412 |
0.2814 |
0.45975183 |
0.9218 |
| 4 |
1907 |
2 |
1543.9 |
6 |
0.4549 |
0.1064 |
0.348488503 |
0.6987 |
| 5 |
932.2 |
3.2 |
621.3 |
4.4 |
-0.2251 |
-0.675 |
0.449913763 |
0.9021 |
| 6 |
1192.1 |
0.4 |
1749.1 |
2 |
0.0107 |
0.2155 |
-0.204821187 |
-0.4107 |
| 7 |
182.4 |
0.9 |
182.7 |
2.6 |
NULL |
NULL |
NULL |
NULL |
| 8 |
602.2 |
1.9 |
1068.7 |
3.7 |
-0.6387 |
-0.2078 |
-0.430881071 |
-0.8639 |
| 9 |
2593.7 |
2.3 |
3937.8 |
1.7 |
0.7464 |
0.9103 |
-0.163919827 |
-0.3287 |
| 10 |
160.7 |
2 |
116.6 |
3.8 |
NULL |
NULL |
NULL |
NULL |
| 11 |
180.7 |
2.3 |
60.7 |
7.4 |
NULL |
NULL |
NULL |
NULL |
| 12 |
816.9 |
2.9 |
1360.5 |
8.2 |
-0.3502 |
-0.0036 |
-0.34662272 |
-0.695 |
| 13 |
350.6 |
3.2 |
343.1 |
3 |
-1.1569 |
-1.1842 |
0.027308739 |
0.0548 |
| 14 |
873.7 |
0.6 |
360.1 |
3.3 |
NULL |
NULL |
NULL |
NULL |
| 15 |
1620 |
2.2 |
2242.8 |
4.7 |
0.3002 |
0.4274 |
-0.127179987 |
-0.255 |
| 16 |
418.3 |
1.5 |
240.5 |
1.8 |
-0.9842 |
-1.4873 |
0.503044799 |
1.0086 |
| 17 |
1717.4 |
1 |
2891.2 |
4.2 |
0.3562 |
0.6451 |
-0.288953738 |
-0.5794 |
| 18 |
250.5 |
2.4 |
213.4 |
3.2 |
-1.4754 |
-1.5958 |
0.12041588 |
0.2414 |
| 19 |
517 |
2.7 |
119.3 |
4.3 |
NULL |
NULL |
NULL |
NULL |
| 20 |
487.3 |
5.2 |
828.5 |
2.3 |
-0.8463 |
-0.4251 |
-0.421258949 |
-0.8446 |
Total number of rows: 4803
Table truncated, full table size 253 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85069_Ch1.imagene.gz |
841.5 Kb |
(ftp)(http) |
IMAGENE |
| GSM85069_Ch2.imagene.gz |
851.6 Kb |
(ftp)(http) |
IMAGENE |
|
|
|
|
 |
