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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV83.02_CONTROL_day10_Slide52 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV83.02_CONTROL_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
7534 |
8.8 |
15025.9 |
64.4 |
1.5549 |
1.9871 |
-0.432 |
-0.8243 |
| 2 |
762 |
3.6 |
779.4 |
13.1 |
-0.733 |
-0.5416 |
-0.191 |
-0.365 |
| 3 |
2085.6 |
3.9 |
1240.3 |
9.2 |
0.9648 |
0.4514 |
0.513 |
0.979 |
| 4 |
2358.8 |
12.4 |
1861.9 |
19.6 |
0.3931 |
0.2049 |
0.188 |
0.359 |
| 5 |
1219.8 |
8 |
659.2 |
13.2 |
-0.2657 |
-0.687 |
0.421 |
0.8035 |
| 6 |
1218.1 |
4 |
1654.8 |
19.2 |
-0.2638 |
0.1036 |
-0.367 |
-0.7007 |
| 7 |
379.7 |
4.5 |
230.5 |
21.8 |
NULL |
NULL |
NULL |
NULL |
| 8 |
500.7 |
6.8 |
1017.5 |
19.6 |
-1.1606 |
-0.3168 |
-0.844 |
-1.6095 |
| 9 |
3160.5 |
9.9 |
4140.5 |
25.6 |
0.6869 |
0.8887 |
-0.202 |
-0.3848 |
| 10 |
379.7 |
17.1 |
169.6 |
28.8 |
NULL |
NULL |
NULL |
NULL |
| 11 |
377.3 |
14.5 |
120.2 |
22.8 |
NULL |
NULL |
NULL |
NULL |
| 12 |
687.4 |
12.8 |
1415.7 |
22 |
-0.8497 |
-0.0325 |
-0.817 |
-1.5585 |
| 13 |
379.4 |
11.6 |
461.3 |
20.2 |
-1.4543 |
-1.0115 |
-0.443 |
-0.8446 |
| 14 |
1230.5 |
6.2 |
436.3 |
9.8 |
NULL |
NULL |
NULL |
NULL |
| 15 |
2015.7 |
7.3 |
2177.4 |
15.5 |
0.238 |
0.341 |
-0.103 |
-0.1963 |
| 16 |
482.5 |
15.1 |
291.5 |
37.6 |
-1.2156 |
-1.4813 |
0.266 |
0.5068 |
| 17 |
3013.6 |
4.5 |
3787.2 |
28.4 |
0.6411 |
0.8117 |
-0.171 |
-0.3253 |
| 18 |
414.2 |
3.3 |
268 |
11.7 |
-1.344 |
-1.4736 |
0.13 |
0.2471 |
| 19 |
812.1 |
12.6 |
155 |
20.4 |
NULL |
NULL |
NULL |
NULL |
| 20 |
720.5 |
3.7 |
901.1 |
16.7 |
-0.7892 |
-0.4196 |
-0.37 |
-0.705 |
Total number of rows: 4803
Table truncated, full table size 242 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85065_Ch1.imagene.gz |
875.0 Kb |
(ftp)(http) |
IMAGENE |
| GSM85065_Ch2.imagene.gz |
868.5 Kb |
(ftp)(http) |
IMAGENE |
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