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|
| Status |
Public on Feb 01, 2006 |
| Title |
RV82.01_CONTROL_day10_Slide53 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RV82.01_CONTROL_day10
|
| Organism |
Rattus norvegicus |
| Characteristics |
Strain: Wistar, Sex: male
|
| Biomaterial provider |
Harlan, Zeist, The Netherlands
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy5
|
| |
|
| Channel 2 |
| Source name |
Reference pool
|
| Organism |
Rattus norvegicus |
| Characteristics |
pooled total RNA from interventricular septum tissue
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Polytron - TriZol
|
| Label |
Cy3
|
| |
|
| |
| Description |
day 10 post saline injection/control
|
| Data processing |
standardized ratio between standardized sample intrensity vs. Reference pool intensity
|
| |
|
| Submission date |
Nov 23, 2005 |
| Last update date |
Apr 23, 2012 |
| Contact name |
Henk Buermans |
| E-mail(s) |
[email protected]
|
| Phone |
+31715268558
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Genetics
|
| Lab |
Leiden Genome Technology Center
|
| Street address |
Albinusdreef 2
|
| City |
Leiden |
| State/province |
ZH |
| ZIP/Postal code |
2300 RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1397 |
| Series (1) |
| GSE3675 |
Gene expression profiles during the development of compensated or decompensated hypertrophy during pressure overload |
|
| Data table header descriptions |
| ID_REF |
|
| CH1_MEAN |
Sample channel raw spot instensity [Cy5] |
| CH1_BKD_MEAN |
Sample channel background spot instensity [Cy5] |
| CH2_MEAN |
Reference channel raw spot instensity [Cy3] |
| CH2_BKD_MEAN |
Reference channel background spot instensity [Cy3] |
| CH1_LOG_STANDARD |
Sample channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy5] |
| CH2_LOG_STANDARD |
Reference channel intensity: background corrected, log2 transformed, standardized to mean=0, sd=1 [Cy3] |
| RATIO |
log2 ratio of sample minus Reference intensity: #CH1_LOG_STANDARD minus #CH2_LOG_STANDARD [Cy5 to Cy3] |
| VALUE |
Standardized log2 of #RATIO column; mean=0, sd=1 |
| Data table |
| ID_REF |
CH1_MEAN |
CH1_BKD_MEAN |
CH2_MEAN |
CH2_BKD_MEAN |
CH1_LOG_STANDARD |
CH2_LOG_STANDARD |
RATIO |
VALUE |
| 1 |
7110.8 |
13.9 |
16084.5 |
64.7 |
1.6639 |
1.9783 |
-0.314 |
-0.6206 |
| 2 |
494.9 |
0.9 |
714.9 |
10.3 |
-0.8026 |
-0.7134 |
-0.089 |
-0.176 |
| 3 |
2512.2 |
2.1 |
2197.7 |
14.7 |
0.7019 |
0.2609 |
0.441 |
0.8705 |
| 4 |
1777 |
0.4 |
2154.6 |
23.4 |
0.382 |
0.2402 |
0.142 |
0.2799 |
| 5 |
668.9 |
2.2 |
697.6 |
30.5 |
-0.5253 |
-0.7606 |
0.235 |
0.4645 |
| 6 |
1314.4 |
1 |
2211.3 |
11.5 |
0.1024 |
0.2675 |
-0.165 |
-0.3259 |
| 7 |
171.5 |
1.8 |
244.7 |
19.5 |
NULL |
NULL |
NULL |
NULL |
| 8 |
366.4 |
3.7 |
963 |
8.6 |
-1.0886 |
-0.452 |
-0.637 |
-1.2565 |
| 9 |
2446.9 |
1.7 |
4365.1 |
15.4 |
0.6776 |
0.8549 |
-0.177 |
-0.35 |
| 10 |
208.4 |
3.5 |
174.5 |
18.4 |
NULL |
NULL |
NULL |
NULL |
| 11 |
282.3 |
2.1 |
166.9 |
25.6 |
NULL |
NULL |
NULL |
NULL |
| 12 |
537.3 |
2.7 |
1642.4 |
45.8 |
-0.7296 |
-0.0087 |
-0.721 |
-1.4229 |
| 13 |
423.1 |
3.6 |
554.1 |
21.4 |
-0.9538 |
-0.9545 |
0.001 |
0.0015 |
| 14 |
674.5 |
0.7 |
260.6 |
11.6 |
NULL |
NULL |
NULL |
NULL |
| 15 |
1398.6 |
0.3 |
2184.7 |
10.9 |
0.1604 |
0.2573 |
-0.097 |
-0.1913 |
| 16 |
299 |
2.3 |
279.3 |
17.3 |
-1.2746 |
-1.566 |
0.291 |
0.5754 |
| 17 |
1993.4 |
2.1 |
3201.1 |
10.1 |
0.4876 |
0.588 |
-0.1 |
-0.1981 |
| 18 |
366.9 |
3.2 |
336.5 |
11.1 |
-1.0861 |
-1.3794 |
0.293 |
0.5789 |
| 19 |
344.6 |
3.9 |
176.1 |
27.3 |
NULL |
NULL |
NULL |
NULL |
| 20 |
384.4 |
1.7 |
1052.4 |
9.6 |
-1.0389 |
-0.3757 |
-0.663 |
-1.3091 |
Total number of rows: 4803
Table truncated, full table size 240 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM85063_Ch1.imagene.gz |
845.0 Kb |
(ftp)(http) |
IMAGENE |
| GSM85063_Ch2.imagene.gz |
872.4 Kb |
(ftp)(http) |
IMAGENE |
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