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Sample GSM848357 Query DataSets for GSM848357
Status Public on Apr 05, 2012
Title Adult_female_Df(3R)ED7665/+_biological_rep_2
Sample type RNA
 
Source name Adult_female_Df(3R)ED7665/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(3R)ED7665/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP42.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.4479609489112
1622892_s_at 7.58608568747313
1622893_at 13.3893542350299
1622894_at 7.38818670161868
1622895_at 8.00671716807367
1622896_at 8.01058074212255
1622897_at 4.43007298038284
1622898_a_at 9.87584350469413
1622899_at 3.85492727450053
1622900_at 3.48212162917525
1622901_at 6.66613305050009
1622902_at 7.54968280756931
1622903_s_at 8.63237232538398
1622904_at 5.1570886868787
1622905_at 3.17664199102988
1622906_at 8.38948069996822
1622907_at 8.25625863120449
1622908_a_at 7.89041018250662
1622909_at 9.65451358587466
1622910_at 3.48689662829661

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848357_DP42.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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