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Sample GSM848355 Query DataSets for GSM848355
Status Public on Apr 05, 2012
Title Adult_female_Df(3R)ED7665/+_Df(2R)ED1612/+
Sample type RNA
 
Source name Adult_female_Df(3R)ED7665/+_Df(2R)ED1612/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(3R)ED7665/+_Df(2R)ED1612/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP40.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.3978588933445
1622892_s_at 7.57704087784273
1622893_at 13.4888469853893
1622894_at 6.69581303682146
1622895_at 8.06655312841731
1622896_at 7.90204706715994
1622897_at 4.49409931917053
1622898_a_at 9.78996408416332
1622899_at 3.85251377130663
1622900_at 3.37670023017549
1622901_at 6.92732275956894
1622902_at 8.12844009057646
1622903_s_at 8.50253018048067
1622904_at 4.88910327199987
1622905_at 3.16747073132486
1622906_at 8.30622346253273
1622907_at 8.25506736020037
1622908_a_at 7.51332038331193
1622909_at 9.92585068118747
1622910_at 3.28788311131276

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848355_DP40.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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