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Sample GSM848345 Query DataSets for GSM848345
Status Public on Apr 05, 2012
Title Adult_female_Df(3R)ED7665/+_biological_rep_1
Sample type RNA
 
Source name Adult_female_Df(3R)ED7665/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(3R)ED7665/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP28.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.3835684001099
1622892_s_at 7.41855459625885
1622893_at 13.566873745737
1622894_at 7.5241857654847
1622895_at 8.00538204332444
1622896_at 8.03972017628126
1622897_at 4.57258782846733
1622898_a_at 10.0226338864538
1622899_at 3.94011260829767
1622900_at 3.3141647048755
1622901_at 6.65931291479438
1622902_at 7.77966138190884
1622903_s_at 8.34884997055171
1622904_at 5.04384037831745
1622905_at 3.07791318952199
1622906_at 8.35457597093824
1622907_at 8.35770477215343
1622908_a_at 8.03818229923037
1622909_at 9.71448041833622
1622910_at 3.32831711274774

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848345_DP28.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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