NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM848338 Query DataSets for GSM848338
Status Public on Apr 05, 2012
Title Adult_female_Df(2R)ED1770/+_biological_rep_2
Sample type RNA
 
Source name Adult_female_Df(2R)ED1770/+
Organism Drosophila melanogaster
Characteristics gender: female
age: adult (0-24hr)
genotype/variation: Df(2R)ED1770/+
Treatment protocol Each sample, containing 15 adult female flies in age 0-24h, were collected and frozen in -70 ̊ C prior to RNA extraction
Growth protocol Flies were cultivated and crossed in vials with potato-yeast-agar medium at 25 ̊ C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using TRIzol reagent (Invitrogen) followed by a purification using RNeasy kit (Qiagen) according to the instruction by the suppliers.
Label biotin
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description DP21.CEL
Gene expression data from adult females
Data processing Raw data was normalized using RMA (R and Bioconductor).
 
Submission date Dec 13, 2011
Last update date Aug 28, 2018
Contact name Jan Larsson
E-mail(s) [email protected]
Organization name Umea University
Department Molecular Biology
Lab Jan Larsson
Street address Umea University
City Umea
ZIP/Postal code SE-90187
Country Sweden
 
Platform ID GPL1322
Series (1)
GSE34400 Buffering and proteolysis are induced upon segmental haploidy in Drosophila melanogaster.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1616608_a_at 13.0591327750388
1622892_s_at 7.05363010201684
1622893_at 13.9830474882643
1622894_at 7.90102015078647
1622895_at 7.86221071269261
1622896_at 8.22289161920748
1622897_at 4.49978790251082
1622898_a_at 10.1912155899078
1622899_at 3.89516168018559
1622900_at 3.47486570707557
1622901_at 6.86255389875593
1622902_at 6.70231423307167
1622903_s_at 8.24798349591175
1622904_at 4.73474436285646
1622905_at 3.12424196584714
1622906_at 8.07186444220112
1622907_at 8.72788211430792
1622908_a_at 9.30630481581074
1622909_at 9.73362249391927
1622910_at 3.14819021965153

Total number of rows: 18952

Table truncated, full table size 524 Kbytes.




Supplementary file Size Download File type/resource
GSM848338_DP21.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap